Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3493 ATGAGGCTTGTCATCTTAGTTCTTTGTGTAATTGTGTTGTTCTCCAATGCAGGTGCTTATGATCCTTTGGATCCAAATGGGAATGTAACAATCAAATGGGATATAGTGTCTTGGACTCCAGATGGCTATGTTGCGGACGTAACGTTGTACAACTTCCAAATGTTCCGGCACTTAATGAACCCTGGATGGACCCTGGGATGGACATGGGCAAAGAAAGAAGTGATATGGTCTATGATAGGAGCTCAAACAACAGAGCAAGGTGACTGCTCAAAGTTCAAAGGGAACATACCTCACTGCTGCAAGAAAATCCCAACAGTTGTGGACTTGCTCCCTGGTGTCCCTTACAACCAGCAATTCACAAATTGTTGTAAGGGTGGAGTTGTTGCCGCATGGGGCCAAGATCCTTCACAGGCTATCTCTTCATTCCAAATAAGTGTTGGCCAAGCCGGTACCTCCAACAAGACGGTTAAACTCCCCAAGAACTTCACTCTCTTGGCTCCCGGACCGGGATACACTTGTGGCCGGGCCAAGGTTGTTCCTTCCACCACTTTTCTTACTCCGGACAAGCGCCGCAAGACTCAAGCCCTGATGACATGGAATGTTACCTGCACATACTCACAATTTCTAGCAAGAAAGAACCCTGCTTGTTGTGTATCTTTGTCATCCTTCTACAATGAAACTATTACCCCTTGTCCCTCTTGTGCATGTGGCTGCCAGAACAAAAGGAATTGTGTCAAGAGTGACTCTAAAATTCTGAGCATGGTTGGTGTTCACACTCCAAAGAAAGACAATGAACCATTGATGCAGTGCACTCATCATATGTGTCCAATAAGGGTGCATTGGCATGTGAAGCAAAACTATAAGGACTATTGGCGAGTCAAGATTGCCATAACAAATTTCAATTACCGGATGAACTATTCCCTCTGGACTCTTGCAATTCAGCATCCAAATCTCAACAATGTCACACAAGTTTTCAGCTTTGATTACAAGCCTATACTTCCCTATGCTTCCATAAATGACACTGGCATGTTCTTTGGCATGAAATACTTCAATGACCTATTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAAGTGCTTCTTCAGAAGGACAAAGACACATTCACATTCAAGCAAGGTTGGGCATTTCCAAGAAAAGTCTACTTTAATGGTGATGAATGCATGCTTCCACCACCAGATTCCTACCCATTCCTCCCTAATTCTTCCCCTCAAACACTAAATGCCTTCCCAGCACTCATTTTATCATTGATATTCTTCCTAGTTTTATGA 1293 0.437 MRLVILVLCVIVLFSNAGAYDPLDPNGNVTIKWDIVSWTPDGYVADVTLYNFQMFRHLMNPGWTLGWTWAKKEVIWSMIGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQAISSFQISVGQAGTSNKTVKLPKNFTLLAPGPGYTCGRAKVVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPACCVSLSSFYNETITPCPSCACGCQNKRNCVKSDSKILSMVGVHTPKKDNEPLMQCTHHMCPIRVHWHVKQNYKDYWRVKIAITNFNYRMNYSLWTLAIQHPNLNNVTQVFSFDYKPILPYASINDTGMFFGMKYFNDLLMEAGPTGNVQSEVLLQKDKDTFTFKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSSPQTLNAFPALILSLIFFLVL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3493 430 PANTHER COBRA-LIKE PROTEIN 5 429 - -
Amo20g3493 430 PANTHER PROTEIN COBRA 5 429 IPR006918 GO:0010215|GO:0031225
Amo20g3493 430 PIRSF COBRA 1 430 IPR006918 GO:0010215|GO:0031225
Amo20g3493 430 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3493 Amo-Chr20 144917049 144919655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3493 19 430 COBRA Gene Family AT3G29810 67.470 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3493 - - gmx:100798678 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3493 20 144917049 144919655 Amo10g2767 10 92484344 92487546 hybridization
Amo20g3493 20 144917049 144919655 Amo14g3833 14 143818729 143820682 PCT