Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3492 ATGTTGTCTTCTTCCGTTGCCAAATTCCGATTCTTCATCAAACCGCCTCCATGCATTTTGCTCTTCTTCCTTCTGTCTTTCACTTCCTTCACTTCAACAGAAGCATATGATGTGCTTGATCCAAACGGAAATATTACAATCAGATGGGATATTATAAGCTGGACACCAGATGGTTATGTTGCTGTTGTTACATTAAACAATTTCCAGCAATACCGTCACATCTCGGCGCCAGGGTGGTCGCTAGGGTGGACATGGGCAAAGAAAGAGGTAATATGGAGCATGATGGGAGGGCAGACTACCGAACAAGGCGATTGCTCGAAATTCAAGACAACCCCACCACATTGCTGTAAAAAGGACCCAACCGTTGTAGATTTACTTCCTGGAACACCATACAATCAACAAATTGCAAATTGTTGCAAAGGAGGTGTACTCAGCTCATGGGGACAGGATCCGGCAAATGCCATTGCATCATTTCAAATCAGTGTTGGTAGAGCTGGAACCTCTAACAAAACAGTCAGGGTGCCCAAGAACTTCACCTTGAAAGCACCGGGACCGGGTTATACCTGTGGGCCGGGAAAAATTGTTCAACCTACTCAATTCTTAACAGGAGATAAAAGAAGAAGGACTCAAGCTCTCATGACATGGAATGTGACATGCATGTATTCACAATTTCTAGCTCAGAAAACTCCCAGTTGCTGTGTTTCACTCTCATCTTTCTATAATGATACCATTGTACCCTGCCCGACATGTTCGTGTGGCTGCCAGGGAAACTCTTCTCAATCCGGGAACTGTGTAGATCCAGATAAACCGCATTTGGCATCGGTTGTTGCTAACCCTGCAAAGAGTTCCCCTTTCGTTCAATGTACTCGCCATATGTGTCCTGTCCGAGTTCATTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTATTACTAATTTCAATTACAAGATGAACTATACAGATTGGAACTTGGTTATTCAACACCCGAATTTCGACAATTTGACTCAGCTTTTTAGTTTTAACTACAAGTCATTGACACCCTATGGCACAATAAATGATACAGCATTGCTATGGGGAATTAAGTTCTACAATGATTTGCTAATGGAAGCCGGTCCGGAAGGTAATGTACAATCAGAGCTACTCTTCCGAAAGGATAAATCAACTTTTACTTTCGACAAAGGTTGGGCGTTTCCTCGGAGGATCTATTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCGTGGCTGCCAAATGCCAGTTCCCGGCAAGAGGTTTCCTTGCTAGCTTTAGTGCTGGCTTCCTTTGTAGCCTTGGCATTGTGTGCATATGCTTAA 1359 0.4386 MLSSSVAKFRFFIKPPPCILLFFLLSFTSFTSTEAYDVLDPNGNITIRWDIISWTPDGYVAVVTLNNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKTTPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWGQDPANAIASFQISVGRAGTSNKTVRVPKNFTLKAPGPGYTCGPGKIVQPTQFLTGDKRRRTQALMTWNVTCMYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCSCGCQGNSSQSGNCVDPDKPHLASVVANPAKSSPFVQCTRHMCPVRVHWHVKLNYKEYWRVKVTITNFNYKMNYTDWNLVIQHPNFDNLTQLFSFNYKSLTPYGTINDTALLWGIKFYNDLLMEAGPEGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRQEVSLLALVLASFVALALCAYA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3492 452 PANTHER PROTEIN COBRA 11 450 IPR006918 GO:0010215|GO:0031225
Amo20g3492 452 PIRSF COBRA 9 452 IPR006918 GO:0010215|GO:0031225
Amo20g3492 452 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Amo20g3492 452 PANTHER COBRA-LIKE PROTEIN 11 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3492 Amo-Chr20 144913608 144916837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3492 1 448 COBRA Gene Family AT3G02210 73.171 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3492 - - gmx:100783820 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3492 20 144913608 144916837 Amo10g2943 10 94852241 94853330 hybridization
Amo20g3492 20 144913608 144916837 Amo14g3832 14 143807665 143818074 PCT
Amo14g3833 14 143818729 143820682 Amo20g3492 20 144913608 144916837 PCT