Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3489 ATGCTATCCGGTGATACGACCGGAAAGATGAACATCACTGTGAGTCCTGATTATGAAGCACCAATTGAGCTTTACAGAACATCACGTGATATGGGCAGGAATGGAACTCTCAACCAAATGATAAATTTGACCTGGGAGTTTCCTGTTGATTCTGGCTTCAACTACATGCTAAGGCTTCACTTTTGCGAGCTAGACCCAGACATCACTAAAACCAATGACAGAATGTTCAACATCTACATAGCAGGCCAGTTAGCTGAGTACCATGCCACTGTTCTAAAATGGAGCAAGCAAAAGGGAATTGCTGTACAGAGAGACTACGCAGTTATGATCCAAGGCCAAGGGATTACTCAGGAAAAGTTTAACCTTTTACTCCAATTCCATCCTGTATCAGACACATGGTACAGCGACCCTTTCTTGAACGGCCTTGAAATCTTCAAAATTAGTGACCCTGCGTCTAATAACCTGGCAGGACCCAACCCTGACCCTATTCCTCATTCATTTGCCCCACCACACCTCTCTGTCTCTCTTCAAATCTCAATCAAGAGGATCATAATAATCATAATAATCTCTGTTGTCCCTGCTGGATTCATTTTTCATTTCATTCTAGTGTTCTTCATCCGTAGAAAACAGAAGACAAAGAGCATAGCCAACACTCAAACCTTATCATTGCCATCCGCTCTTTGTCGTCGATTTTCCTTGGTTGAGATGAAAACATGCACCAATAACTTCGATGAGCTCCTCCTTATCGGAGTGGGAGGGTTTGGCAACGTGTACAAAGGCTACATCGACCAAGGTTCAACACCAGTCGCGATCAAACGGTTAAAACCGGGTTCACAGCAAGGGGTTCACGAATTCAGGACCGAAATTCAGATGCTCTCTCAACTGCGCCATCTCCACCTTGTGTCCCTTATTGGTTACTGCTGTGAGAGCAACGAGATGCTCTTGGTCTATGATTTCATGGATCGAGGAACCTTACAAGATCATCTCTACAACAATAATAATAACCCTTCCCTCTCGTGGAAGCAACGGTTGCATATCTGCATAGGAGCAGCGAAGGGGTTGCATTATCTCCATGCAGGTGCGGTCCACAATATCATTCACCGCGATGTAAAGAGCACCAACATCTTATTGGATGAGAAATGGGTGGCCAAGGTTTCCGATTTCGGCTTGTCCAAAATAGGACCCTCTGGCATTTCAAGAACCCACATTAGCACTGTGGTGAAGGGCAGTCTTGGGTATTTAGATCCAGAATATTATAAACGACAGCGTTTAACTGTGAAATCTGACGTGTACTCCTTCGGAGTAGTGCTGTTTGAGGTGTTGTGTGGGAGGCCGCCTTTGATGAGGACAGTGGAAAAACAACAGATGTCACTTGCTCATTGGGTTGTATGTTGCCATGAAGATGGCACGTTGGATCAGATTGTGGACAAAGCATTAGAGGGTCAGATTGAACCGGAGTGCTTAACGAAGTTTGGTGACATTGCTGTGAGATGTTTGCATGAAGATGGTTCCCAACGACCTTCCATGGATGAAATTGTTTGGTGTTTGGAGTTTGCATTGATACTGCAAGAGAGTGGTGAGACGCATCAAGAACATCTTCTTACTGCACCTGAAATGCTTGAAATTAGCAATGTGTAA 1638 0.4451 MLSGDTTGKMNITVSPDYEAPIELYRTSRDMGRNGTLNQMINLTWEFPVDSGFNYMLRLHFCELDPDITKTNDRMFNIYIAGQLAEYHATVLKWSKQKGIAVQRDYAVMIQGQGITQEKFNLLLQFHPVSDTWYSDPFLNGLEIFKISDPASNNLAGPNPDPIPHSFAPPHLSVSLQISIKRIIIIIIISVVPAGFIFHFILVFFIRRKQKTKSIANTQTLSLPSALCRRFSLVEMKTCTNNFDELLLIGVGGFGNVYKGYIDQGSTPVAIKRLKPGSQQGVHEFRTEIQMLSQLRHLHLVSLIGYCCESNEMLLVYDFMDRGTLQDHLYNNNNNPSLSWKQRLHICIGAAKGLHYLHAGAVHNIIHRDVKSTNILLDEKWVAKVSDFGLSKIGPSGISRTHISTVVKGSLGYLDPEYYKRQRLTVKSDVYSFGVVLFEVLCGRPPLMRTVEKQQMSLAHWVVCCHEDGTLDQIVDKALEGQIEPECLTKFGDIAVRCLHEDGSQRPSMDEIVWCLEFALILQESGETHQEHLLTAPEMLEISNV* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3489 545 CDD STKc_IRAK 249 513 - -
Amo20g3489 545 Gene3D Transferase(Phosphotransferase) domain 1 320 534 - -
Amo20g3489 545 Gene3D Phosphorylase Kinase; domain 1 228 319 - -
Amo20g3489 545 ProSiteProfiles Protein kinase domain profile. 243 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3489 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Amo20g3489 545 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 213 529 - -
Amo20g3489 545 Gene3D - 2 148 - -
Amo20g3489 545 SMART serkin_6 243 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3489 545 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 10 217 - -
Amo20g3489 545 Pfam Protein tyrosine and serine/threonine kinase 249 515 IPR001245 GO:0004672|GO:0006468
Amo20g3489 545 Pfam Malectin-like domain 6 147 IPR024788 -
Amo20g3489 545 SUPERFAMILY Protein kinase-like (PK-like) 215 518 IPR011009 -
Amo20g3489 545 ProSitePatterns Protein kinases ATP-binding region signature. 249 272 IPR017441 GO:0005524
Amo20g3489 545 PANTHER OS07G0166700 PROTEIN 213 529 IPR045272 GO:0004714|GO:0006468
Amo20g3489 545 PANTHER OS07G0166700 PROTEIN 10 217 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3489 Amo-Chr20 144862389 144864026 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3489 13 542 Receptor kinase-like Gene Family AT3G51550 51.418 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Amo20g3489 PK_Tyr_Ser-Thr 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3489 - - adu:107471340 837.795