Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3481 ATGGAACGGAGACATACACTCAAATCTCTTAACTCTTTTACACACAAAAACCATCGTTGCTCAACCAGCCACACAACCTTCTTCGAACAAAGTTCCATAGCAGGCCAGTTAGCTGAGGACCATGCCACTGTTCTAGAATGGAGCAAGGAAAAGGGAATTGCTGTACAGAGAGACTACGCAGTTATGATCCAAGGCCAAGGGATTACTAAGGAAAAGTTTAACCTTTCACTCCAATTCCATCCGGCATCAGGCACGTGGTACAGCGACGCTTTCTTGAACGGCCTTGAAATCTTCAAAATTAGTGACCCTGCGTCTAATAACCTGGCAGGACCCAACCCTGACCTTCTTTCTCATCCATTTGCCCCACCACACTTCTCTGTCTATGTTCAAATCTCAATCAAGAGGATCATAATAATCATAATAATCTCTGTTGTCCCTGCTGGATTCATTTTTCATTTCATTCTAGTGTTCTTCATCCTTAGAAAACAGAAGAAAAAGACCAGGAAGACATCTTCCAAAGAAGCCAACACTCAAACCTTACCATTGCCATCCGCTCTTTGTCGTCGATTTTCCTTGGTTGAGATAAAAACAGCCACCAACAACTTCGATGAGCTCCTCCTTATCGGAGTGGGAGGGTTTGGCAACGTGTACAAAGGCTACATCGACGAAGGTTCAACACCAGCCGCGATCAAACGGTTAAAACCGGGTTCACAACACGGGGTTCAGGAATTCATGACCGAAATTCAGATGCTCTCTCAACTGCGCCATCTCCACCTTGTTTCCCTCATTGGTTATTGCTGTGAGAGCAACGAGATGCTCTTGGTCTATGATTTCATGGATCGAGGAACCTTACAAGATCATCTCTACAACAATAGTAGTAACCCTTCCCTTTCGTGGAAGCAACGGTTGCATATCTGCATAGGAGCAGCGAAGGGGTTGCATTATCTCCATGCAGGTGCGGTCCACAATATCATTCACCGCGATGTAAAGAGCACCAACATCTTATTGGATGACAAATGGGTGGCCAAGGTTTCAGATTTTGGCTTGTCCAAAATAGGACCCTCTGGCATTTCAATAACCCACATTAGCACTGTGGTGAAGGGCAGTCTTGGATATTTAGACCCAGAATACTATAAACGACAGCGTTTAACTGTGAAGTCTGACGTGTACTCCTTTGGAGTAGTGCTGTTTGAGGTGCTGTGTGGGAGGCCGCCTTTGATGAGGACAGTGGAAAAACAACAGATGTCACTTGCTCATTGGGCTGTATCTTGTTACGAAGATGGCACGTTGGATCAGATTGTGGACAAAGCATTGAAGGGTCAGATTGCACCGGAATGCTTGACGAAGTTTGGTGAGATTGGTGTGAGATGTTTGCATGAAGATGGTTCCCAACGACCTTCCATGGATGAAATTGTTTGGTGTTTGGAGTTTGCATTGATACTGCAAGAGAGTGCTGAGACGCATCAAGAACATCTTGTTACTGCAATTGAAATGCTTGAAATTAGCAATGTGTAA 1515 0.4475 MERRHTLKSLNSFTHKNHRCSTSHTTFFEQSSIAGQLAEDHATVLEWSKEKGIAVQRDYAVMIQGQGITKEKFNLSLQFHPASGTWYSDAFLNGLEIFKISDPASNNLAGPNPDLLSHPFAPPHFSVYVQISIKRIIIIIIISVVPAGFIFHFILVFFILRKQKKKTRKTSSKEANTQTLPLPSALCRRFSLVEIKTATNNFDELLLIGVGGFGNVYKGYIDEGSTPAAIKRLKPGSQHGVQEFMTEIQMLSQLRHLHLVSLIGYCCESNEMLLVYDFMDRGTLQDHLYNNSSNPSLSWKQRLHICIGAAKGLHYLHAGAVHNIIHRDVKSTNILLDDKWVAKVSDFGLSKIGPSGISITHISTVVKGSLGYLDPEYYKRQRLTVKSDVYSFGVVLFEVLCGRPPLMRTVEKQQMSLAHWAVSCYEDGTLDQIVDKALKGQIAPECLTKFGEIGVRCLHEDGSQRPSMDEIVWCLEFALILQESAETHQEHLVTAIEMLEISNV* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3481 504 Gene3D Transferase(Phosphotransferase) domain 1 279 498 - -
Amo20g3481 504 PANTHER OS07G0166700 PROTEIN 32 494 IPR045272 GO:0004714|GO:0006468
Amo20g3481 504 PANTHER GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED 32 494 - -
Amo20g3481 504 SUPERFAMILY Protein kinase-like (PK-like) 187 480 IPR011009 -
Amo20g3481 504 SMART serkin_6 202 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3481 504 CDD STKc_IRAK 208 472 - -
Amo20g3481 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Amo20g3481 504 Pfam Protein tyrosine and serine/threonine kinase 208 474 IPR001245 GO:0004672|GO:0006468
Amo20g3481 504 ProSitePatterns Protein kinases ATP-binding region signature. 208 231 IPR017441 GO:0005524
Amo20g3481 504 ProSiteProfiles Protein kinase domain profile. 202 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3481 504 Gene3D Phosphorylase Kinase; domain 1 187 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3481 Amo-Chr20 144525689 144527674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3481 36 501 Receptor kinase-like Gene Family AT3G51550 51.215 1.86e-158 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Amo20g3481 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3481 - - adu:107471340 981.089