Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3445 CGTGGAATAAAGTCGCTTAGTAATTTGGTTATTCAACTTAGGGAAGTCTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATGGCTTTATCCTCCTGTAAATGAGATAGTTGAACAATGTGAAAATTTTCGTTTGCTTGAACGGCTGTTGAAAAGGTTATTTGCAAGAAAACACAAAAAAGCCATTGGATTTTATTCGGAAGCCATAAAACTAAGCAGTAACAATGCAACATACGACAGTGATAGGTCCCAAGCTTATCTAGAACTTGGAAGTTACCTCCAAGCTGAAGCAGATTGTACAAAAGCAATTAACTTTGACAAAAAGGTCAGCTATTTTTCTTTGCACAACACAGCTTGGAAGATTAGAAGTTGCAAAGAAAGTCTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAGGGGTGGAAAGCTCTGCGGAAAGCTCTGTGATTATCATGTTTGTAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATAGGTCTTGGTAAAATTGTTCAGTCAGTTTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTACCATTGTCTACTTTATCAGACTGGCTAAGTATGCTAACTGCCAAGTGA 645 0.3891 RGIKSLSNLVIQLREVCNHPDLLESAFDGSWLYPPVNEIVEQCENFRLLERLLKRLFARKHKKAIGFYSEAIKLSSNNATYDSDRSQAYLELGSYLQAEADCTKAINFDKKVSYFSLHNTAWKIRSCKESLRKLEEQPEWLRGGKLCGKLCDYHVCSWRNDTNVILADEIGLGKIVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSDWLSMLTAK* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3445 214 Pfam SNF2-related domain 150 209 IPR000330 GO:0005524|GO:0140658
Amo20g3445 214 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 3 65 - -
Amo20g3445 214 SUPERFAMILY TPR-like 58 112 IPR011990 GO:0005515
Amo20g3445 214 PANTHER SNF2/RAD54 HELICASE FAMILY 3 65 - -
Amo20g3445 214 Gene3D Tetratricopeptide repeat domain 54 141 IPR011990 GO:0005515
Amo20g3445 214 PANTHER SNF2/RAD54 HELICASE FAMILY 140 209 - -
Amo20g3445 214 Gene3D - 155 209 IPR038718 -
Amo20g3445 214 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 140 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3445 Amo-Chr20 143935413 143937578 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo20g3445 SNF2_N 4.7e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3445 K11367 - dcr:108226771 130.568