Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3435 ATGGCTGAGAACTTTGATTACCTTGCTAATGGTCATAGGTTGCAAGCTTCGATACCAAAACCATTGGTTAAGAAGTGGAAGGATGTCATAGTGGAGTTTCAGATGTACACGATGAAAAATTTCGTTATTTTGGATAATACTACATACCCCAAGGTAACTCCGGATAAATATATATTGGTTTTCTCACACCAGACCAGGGTTCATCACGTTGAACATCCAAGCTTTCCACTTGATGCCTTTCGCTTGAAGTCATTTAAGGAGTTGCTTAATGCTGATAAGTTGGATGACTCTGAACTTATTGATATAATTGGTGAAGTTGTAGGCAAAGAGGATCCGAGGGATTTGGTAACCAGCAAAGGGGTGGAGACTAAACGGTTGGCCATAATCCTACAAGATTTAGACAACAATAAGATTAGCTATGCTCTGTTTGGTAAAATGGTAGACGAGTTTTTACCTTATCTTCACGATGGAAGGGTTGAACCCCTCATTATAGTGCTCCAATATTTTAAACCCAATAGATGGAATGGTAAAACATCTGTCCAGAGTCATTTCTATGTTTCCAAGCTGCACATCAATGATGGTTTAAAAGAAGTTGCTGGATTCCGAAATAGTTTCATCTCGGGGGGATGGTCTGGAGCTGATGAGATAAACCAAGGTGCTGTTTTGGTGAAGACTATTGAGCAAGCACTTAATGTTAAAGAGGAAGGTCCGATATGGATATGTGCAAGCATTATATCTTTAAATGTTGGTAAGGATGATTGGTTTTATAAATCGTGCAGGAAATGTTCAAAAAAAGTTGATACTCCTATTGGAAATAGATATGAATGTACCAAGTGTGGACACACTTATGGTTGTGCTTCTTTGAGGTTCAAGGTACAGGTCATGGTCCACGATGGAACTGGGAGTATCACCCTCTTGCTTTGGAATAAGGAAACAACTCAACTTTGCAGAAAGAAAGCTGAACAAGTAATGGAGGATGATGTTATAGGTGACGATGCTTATCCACTCACCTTTGATAACATGATGGATAGGAAAGTTCTATTTAAGATTAATGTGAAGTCTGCTAATATCAAGGGTTTTGATCAAATATATACTGTTATGAAAATTTGTGATGATGAGGATATCATTGAGAAGAATATGCCCAAAGAAATTGCTGAGAGTACATCTACATTTGTTACTGTACGTTTATAA 1191 0.3795 MAENFDYLANGHRLQASIPKPLVKKWKDVIVEFQMYTMKNFVILDNTTYPKVTPDKYILVFSHQTRVHHVEHPSFPLDAFRLKSFKELLNADKLDDSELIDIIGEVVGKEDPRDLVTSKGVETKRLAIILQDLDNNKISYALFGKMVDEFLPYLHDGRVEPLIIVLQYFKPNRWNGKTSVQSHFYVSKLHINDGLKEVAGFRNSFISGGWSGADEINQGAVLVKTIEQALNVKEEGPIWICASIISLNVGKDDWFYKSCRKCSKKVDTPIGNRYECTKCGHTYGCASLRFKVQVMVHDGTGSITLLLWNKETTQLCRKKAEQVMEDDVIGDDAYPLTFDNMMDRKVLFKINVKSANIKGFDQIYTVMKICDDEDIIEKNMPKEIAESTSTFVTVRL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3435 396 Gene3D - 210 385 IPR012340 -
Amo20g3435 396 Pfam Replication factor-A C terminal domain 249 369 IPR013955 -
Amo20g3435 396 Pfam Domain of unknown function DUF223 10 85 IPR003871 -
Amo20g3435 396 PANTHER REPLICATION FACTOR A 1, RFA1 7 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo20g3435 396 SUPERFAMILY Nucleic acid-binding proteins 224 371 IPR012340 -
Amo20g3435 396 Gene3D - 5 72 IPR012340 -
Amo20g3435 396 SUPERFAMILY Nucleic acid-binding proteins 82 206 IPR012340 -
Amo20g3435 396 CDD RPA1_DBD_C 223 369 IPR013955 -
Amo20g3435 396 Gene3D - 74 209 IPR012340 -
Amo20g3435 396 PANTHER BNAC07G49340D PROTEIN 7 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3435 Amo-Chr20 143779666 143781853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3435 71 308 Core DNA Replication Machinery Family AT2G06510 23.938 3.27e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3435 - - adu:107477039 739.954