Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3434 ATGGCTCATTTTGGTGACGTATACTTTTATGATGGAAGGAAGATATTAAACAACCTTCTTGAGGGAAAAGAGACTTCTCGTGGTAAGCAATTAGAGTCAGACATCACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAACARTGCAGCTTTCAATGGGGATCGTGTTGCTTCTTTACTTGTTAGAGAAGGAGCCGCCATGAAGATAGAAGATGGCGGTAGTTTTCTATGCACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGGCTACTGTCTAATGGCATGGATCCCAACTTGAAAGATTATGATTACCGAAGCCCTTTGCACGTTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCTGGAGCCAATAAAATGCATCCACAGAAATGTACTGTGTTCCCTTTCCATCCATGGGATCCAAAAGATCATACAAAACATGGCATTGTATTATGGATTCCACATACCATTGAAGAGCTAATCAAAATGGCAGCGGATCAATTTGAGTTTCCTAGTGATTCTTGTGTTTTTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAAGATGGTCAGAAGCTCTATTTAGTTCATCAAACACATTAG 648 0.3904 MAHFGDVYFYDGRKILNNLLEGKETSRGKQLESDITFHIGKQEAELALKVNXAAFNGDRVASLLVREGAAMKIEDGGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHVAAAEGLYFMAKLLLEAGANKMHPQKCTVFPFHPWDPKDHTKHGIVLWIPHTIEELIKMAADQFEFPSDSCVFILSEDAGKITDVDMIKDGQKLYLVHQTH* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3434 215 Pfam Ankyrin repeats (3 copies) 52 135 IPR002110 GO:0005515
Amo20g3434 215 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Amo20g3434 215 PANTHER POTASSIUM CHANNEL AKT1 58 134 IPR045319 GO:0005249|GO:0006813
Amo20g3434 215 Pfam KHA, dimerisation domain of potassium ion channel 140 210 IPR021789 -
Amo20g3434 215 SMART ANK_2a 108 137 IPR002110 GO:0005515
Amo20g3434 215 SMART ANK_2a 75 104 IPR002110 GO:0005515
Amo20g3434 215 ProSiteProfiles Ankyrin repeat region circular profile. 108 134 - -
Amo20g3434 215 Gene3D - 50 151 IPR036770 -
Amo20g3434 215 ProSiteProfiles KHA domain profile. 140 215 IPR021789 -
Amo20g3434 215 ProSiteProfiles Ankyrin repeat profile. 108 134 IPR002110 GO:0005515
Amo20g3434 215 PANTHER POTASSIUM CHANNEL AKT1 134 214 IPR045319 GO:0005249|GO:0006813
Amo20g3434 215 ProSiteProfiles Ankyrin repeat region circular profile. 75 106 - -
Amo20g3434 215 PANTHER POTASSIUM CHANNEL SKOR-LIKE 58 134 - -
Amo20g3434 215 SUPERFAMILY Ankyrin repeat 53 147 IPR036770 -
Amo20g3434 215 PANTHER POTASSIUM CHANNEL AKT1 6 58 IPR045319 GO:0005249|GO:0006813
Amo20g3434 215 PANTHER POTASSIUM CHANNEL SKOR-LIKE 134 214 - -
Amo20g3434 215 PANTHER POTASSIUM CHANNEL SKOR-LIKE 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3434 Amo-Chr20 143771536 143772357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3434 60 134 Ion Channels AT5G37500 68.000 3.55e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3434 K21867 - gmx:100814385 270.781