Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3409 ATGGCAACCGCAAGGACAGTCAAGGATGTTTCGCCTCACGAATTCGTCAAGGCCTATGCCTCTCACCTCAAGCGTTCTGGCAAGATGGAGCTGCCTGAGTGGACAGATATTGTGAAGACTGCAAAGTTTAAGGAACTGGCTCCTTATGATCCTGACTGGTATTATGTTAGATCTGCCTCCATGGCAAGAAAGATCTACTTGAGAGGTGGTCTTGGTGTTGGTGCGTTTAAGAGGATCTATGGTGGAAGTAAGAGAAATGGAAGCCGCCCCCCACATTTCTGCCGGAGTAGCGGCAGTATTGCCAGACACATTCTGAAACAATTGCAAAAGATGGGCATTATTGAGCAGGAGTTAAAAGGTGGTAGAAGAATCACTTCCAATGGCCGACGGGATCTCGATCAAGTTGCTGGTCGCATTGTTGTTGCCCCTTGA 432 0.4815 MATARTVKDVSPHEFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRSASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCRSSGSIARHILKQLQKMGIIEQELKGGRRITSNGRRDLDQVAGRIVVAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3409 143 PANTHER 40S RIBOSOMAL PROTEIN S19-3 3 142 - -
Amo20g3409 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Amo20g3409 143 Gene3D - 1 142 IPR036388 -
Amo20g3409 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Amo20g3409 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Amo20g3409 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3409 Amo-Chr20 143375723 143377429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3409 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 82.517 4.87e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3409 K02966 - gmx:100499800 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3409 20 143375723 143377429 Amo20g3409 20 143375723 143377429 ECH
Amo20g3409 20 143375723 143377429 Amo10g2753 10 92219258 92220956 hybridization