Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3396 ATGATGGACAAGGAAAGTGAAGAATTGGCATTAACCCCAGAAGTGACTAAGCCGGATACGGTTGAAACAAGAAGGTTCTCTTCTGGCAAAGGATCTTCTGGAAATAGCACTGCAAAAGTTGTTCCTCGTTATCTCCGAGCTTCAACTGGTTCTTGTCATGATTTTTGTAAATATGGGAGGAAGCACGAACTTGAAGGGAATGAAAGGCGTTCTATACCTGATAGAGCTACACGAAAACAACTTTACCAGAGTTCTCAAAAGAGTATTGGGGGGATAATGACATCGGTTGCCAAACTCAGAGGGTCACTTGATTCAAGGTTGCCTTTTGTCAAACTACAAGAATCAATTGATTCCGAGCATGACATTTCCGATACTGCTGGCACCAATAAGCATGGACTGTCAACAAAATCATTCGACAAGGAAAAGCAAATAGGGAATGATGCTCCGGAAAACTGGAAGAAAACATCGTTGGTCAAGTTCAAACCCTCCCTCCTGAAATCCCATACATCTCCATTGGCAATACAGGAAATTTCAACGACTGCAAAGGAGGTGAAGCCTTCATTGAAATCAACTTCTCTCAAGTTGGAAACTTCACCAAAATCAGCTTCTAAGAAGGTGGAAGCTCCATCAAATTTAAGTTCCAAGAAGGTGAAAGCTCAATCAAAGTCAATTTCCAACAATGGGGAAACACCATCAAGATCAGATTCCAAGGTCAAAACTTCATCAAGATCAACTTCCAAGCCGGTGGAAACTTCGTCGGAGGCATCTTCTTTAAAGGGTAATAAGGACATGAAGTTGTCTGAAAAACGGGTAACTTCTTTGAGCCCAGACTCTGCCACAAGGAACACAATTTCAACTATGAAATCCTCGAAAAGCTTTGGTAGCAAAATGAATAGTGAGATCAAGATGGAAAAGGATGCAGCCTCTTCCAAAACAGCTTCAAGAAAATTGATAGCACCAATAAGGACCCCAGTGTCCCCAAGACCTTCTCTTGTAAGAGTTGCAAGTTTAAATTCAAGAAAGAATAAGAGCCTGAAAATCGTGTCTCGTCTTAAGAATCAGCAGAATGCCAGAAAAGTTGCACCTGAGGAATCCAACAATAATGACAATCAGGTCGAGGAAAAAACTCTGTACGTTATCAAGATGGAAAGTGGGAACAAAACTTTGGAATCTGATCAAAATCCAAGCTATGACAATGAACCATCCCTTCCGCAGATGTCACCACCAAACCCTTCACCGCCTTCAACTTCTGAATCTGTATCCCAAGAAGATCAAGAGGAATCTGACTATACAAGTAGTGAATTCGAGATGGATTCTTTCTCAAGTAACCATGAGCTTGAAAACATGGAAAATAGGGAGACTTTGGAAGTTGAGAAGGGAAAGCCGACAAAGGGTGGGATTGTGTGCTCCGATGATGCGGCCCAAGTGCTGAAATTGAAGTTCAGAAGGGGAAAAGTTGTCGATAATCAACTTGAGAGAAACACTCCAAGGAGGCTAAAATTTCGGAGAGCAAAACTGTTGGGGGAGAAAGCAAATCTTAAGGGTGGAAGGAAAAGCCTTAAAGGACTAGATGAAGGTTTTGCTGATGGAGCCGATGCTACAACTGGTCCAGAGAAGGTTGTCTTGAGACATCAAGATATGCAGGACAAGAAAGATGCTCAGGGATTGTTCAATAACGTGATCGAGGAAACGGCGAGTAAACTAGTCGAAGCACGGAAGAGCAAGGTTAAAGCATTGGTTGGTGCTTTTGAAACTGTAATCTCCCTACAAGAGAAGAAACCTCCTGCTAACACTGTCAGTTGA 1803 0.4221 MMDKESEELALTPEVTKPDTVETRRFSSGKGSSGNSTAKVVPRYLRASTGSCHDFCKYGRKHELEGNERRSIPDRATRKQLYQSSQKSIGGIMTSVAKLRGSLDSRLPFVKLQESIDSEHDISDTAGTNKHGLSTKSFDKEKQIGNDAPENWKKTSLVKFKPSLLKSHTSPLAIQEISTTAKEVKPSLKSTSLKLETSPKSASKKVEAPSNLSSKKVKAQSKSISNNGETPSRSDSKVKTSSRSTSKPVETSSEASSLKGNKDMKLSEKRVTSLSPDSATRNTISTMKSSKSFGSKMNSEIKMEKDAASSKTASRKLIAPIRTPVSPRPSLVRVASLNSRKNKSLKIVSRLKNQQNARKVAPEESNNNDNQVEEKTLYVIKMESGNKTLESDQNPSYDNEPSLPQMSPPNPSPPSTSESVSQEDQEESDYTSSEFEMDSFSSNHELENMENRETLEVEKGKPTKGGIVCSDDAAQVLKLKFRRGKVVDNQLERNTPRRLKFRRAKLLGEKANLKGGRKSLKGLDEGFADGADATTGPEKVVLRHQDMQDKKDAQGLFNNVIEETASKLVEARKSKVKALVGAFETVISLQEKKPPANTVS* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3396 600 MobiDBLite consensus disorder prediction 25 39 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 440 460 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 332 374 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 181 260 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 386 401 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 271 297 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 1 41 - -
Amo20g3396 600 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 480 597 - -
Amo20g3396 600 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 2 475 - -
Amo20g3396 600 Pfam Plant calmodulin-binding domain 478 588 IPR012417 GO:0005516
Amo20g3396 600 MobiDBLite consensus disorder prediction 134 148 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 181 466 - -
Amo20g3396 600 MobiDBLite consensus disorder prediction 121 149 - -
Amo20g3396 600 SMART CaM_binding_2 475 588 IPR012417 GO:0005516
Amo20g3396 600 PANTHER EMB|CAB62594.1 2 475 - -
Amo20g3396 600 PANTHER EMB|CAB62594.1 480 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3396 Amo-Chr20 143166685 143170324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3396 538 586 Calmodulin-binding Proteins AT2G38800 46.000 9.96e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3396 - - adu:107471215 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3396 20 143166685 143170324 Amo10g2740 10 92063577 92066993 hybridization
Amo20g3396 20 143166685 143170324 Amo14g3750 14 142656059 142659303 PCT
Amo14g3750 14 142656059 142659303 Amo20g3396 20 143166685 143170324 PCT