Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3393 ATGGCTGCCGCAAAACCTCAGAGGACTCCACAGGAAGTGGAGGACATAATCATCCGCAAAATCTTTCTCGTGTCGATCACCGATTCCGCCGCGACTAACGCCGATTCCAGAAACGTCTATTTGGAGCTCACAGCGGCGGAGATTCTTAGCGAAGGCAAGGACCTCCGCCTCTCGCGCGATTTGATGGAGCGAGTCCTCATTGATCGACTATCCGGCGACTTTCCCGGCGTCGGAGAATCCCCGTTCCAGTACCTCACCGGTTGCTACCACCGCGCGCATGAGGAGGCAAAGAAAATCGCCAACATGAAGGACAAAACCCTCAGGTCGGAGATGGAGGCGGTGGTGAAACAGGCCAAGAAACTGTGCGTCTCATACTGCAGGATTCACCTCGGCAATCCGGAGCTGTTTCAGAACCGGAATCAAAGTTCCGGTTCGGGAACCGCGTCGCCTCTGCTGCCACTGATATTCGCGGAGGTTGGCGGTGGCATCGACGCGTTCGGAGGTAGCAGTGGTGGCGGAGGGCCAAAGAGTCCACCGGGGTTTCTTGAGGAGTTCTTTAGGGACTCGGATTTTGACAGCCTGGACCCAATCTTGAAAGGACTGTATGAGGAGCTGAGAGGAAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGACTCTTTGAGGGCTTTGTTGTTCTTGGTGAGATTCCCTGTTGGTGCAAAGTCACTTGTGAGCCACGAGTGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCCATTGAGATGACCAGCATTTTGGGTCCCTTCTTTCACATTAGTGCTCTTCCTGATCAAACCTTTTTCAGGAGCCAGCCTGACGTTGGACAACAGTGCTTTTCTGATGCATCAACTCGACGACCAGCAGATTTATTATCTTCATTCTCGACTATCAAAACTGTCATGAATAATTTGTATGATGGCCTGTATGAAGTTCTCTTCATTCTCCTTAAGAGTAAAGATACTCGTGATAGTGTACTTGAGTATCTCGCCGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATAACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCATCTTTGTGAGCCATTTTTGGATGCAAATTTAACCAAAAGGAATAAAATTGATCCAAAATATGTACACTACTCCAACCGTTTGAAGCTAAGTGGGTTGACTGCTCTACATGCATCATCGGAAGAAGTTACTGAATGGCTTAATAGCAATAAACGGGCTAATGGAAACAATCAAAATAATGATGGCCAGAAACGCTTGGAGCAATCTCAAGAAGCAAGTAGTTCTGGTAGTAATGCTGGTGAGCTTTCAAATGAAATTTCTGGACATGGTGAAAAGACGGAATATCATTTCATTTGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGATTTCAAACACTTAGTTCAGGATATTTCTAGATGTGAAGATGCTCTTTCAACACTAAAAGCCATGCAAGAGCAATCTCCCACCCCCCAATTGCAATTGGATATAACTAGACTTGAGAAAGAATTGGAATCGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATATTGCGGGATAACACGCTTATTCAGAATGCACTATCCTTCTACCGTTTGATGATTGTTTGGTTGGTTAGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCGACTTGCCCAATGGAATTTGCCACTATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCCAAGGCCTTGGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTTATGGCTAGCCCTGAATTCATCAAAAACCCATATTTAAGAGCAAAGATGGTCGAAGTCTTGAACTGTTGGATGCCCCGTAGGAGCGGTTCATCTGCCACAGCTACTTTATTTGAAGGCCACCAACTGTCTCTGGAGTATCTTGTGAGGAATCTTCTAAAACTCTATGTTGACATTGAGTTCACCGGGTCTCACACGCAGTTCTATGACAAATTTAATATCCGCCATAATATAGCCGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAAGAGGAAAAGGGTGTTTATCTGAATTTCTTAAACTTCCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTCAACAAAATTCTTGAGCTAAAAGAGTTGGAGGCTGAAATGTCAAATACAGCTGAGTGGGAACGACGGCCACTTCAAGAGAGGCAGGAGAGGACACGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTTGCATTTACATCAGAGCAGATTACTGCTCCATTCCTACTTCCAGAGATGGTTGAAAGAGTGGCTAGTATGCTCAATTACTTTCTGCTGCAACTAGTGGGTCCCCAAAGAAAATCCCTTAGTCTGAAAGATCCTGAGAAATATGAATTTCGGCCAAAGCATTTGCTTAAACAGATTGTGCACGTATATGTTCACCTGGCAAGAGGTGATTCAAATTCCATCTTCCCAGCTGCCATCTCCAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCAGAGGTTCTTCATAGAATAGGTGAGGATGGGAGAATCATACAAGAATTCATTCAACTCGGTGCTAAGGCAAAAGTTGCAGCTTCTGAAGCCATGGATACTGAAGCTACCTTGGGAGAAATTCCAGATGAATTCCTTGATCCAATTCAATACACTTTAATGAAGGATCCTGTCATCTTACCTTCTTCAAGAATCGTAGTTGATCGACCTGTCATACAGAGGCACCTTCTTAGTGATAGCTCCGACCCATTCAACCGATCCCATCTTACCGCCGACATGTTGATTCCTGATACTGAACTCAAAGCAAGAATAGAGGAGTTTGTCAAGTCCCAGGAAATGAAGAAACGTAGTGAAGGTATAAGCATACAGAGCACCAAGGACACGATTCAGACAACAAATGGGGAAATGTTGATCGACTAG 3117 0.4427 MAAAKPQRTPQEVEDIIIRKIFLVSITDSAATNADSRNVYLELTAAEILSEGKDLRLSRDLMERVLIDRLSGDFPGVGESPFQYLTGCYHRAHEEAKKIANMKDKTLRSEMEAVVKQAKKLCVSYCRIHLGNPELFQNRNQSSGSGTASPLLPLIFAEVGGGIDAFGGSSGGGGPKSPPGFLEEFFRDSDFDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFRSQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLYEVLFILLKSKDTRDSVLEYLAEVININASRAHIQVDPITCASSGMFVNLSAVMLHLCEPFLDANLTKRNKIDPKYVHYSNRLKLSGLTALHASSEEVTEWLNSNKRANGNNQNNDGQKRLEQSQEASSSGSNAGELSNEISGHGEKTEYHFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQEQSPTPQLQLDITRLEKELESYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVSLVGGFKMPLPSTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPLQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDSNSIFPAAISKDGRSYNDQLFSAAAEVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRIVVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDTELKARIEEFVKSQEMKKRSEGISIQSTKDTIQTTNGEMLID* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3393 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 1018 IPR013083 -
Amo20g3393 1038 ProSiteProfiles U-box domain profile. 939 1013 IPR003613 GO:0004842|GO:0016567
Amo20g3393 1038 SMART Ubox_2 943 1006 IPR003613 GO:0004842|GO:0016567
Amo20g3393 1038 PANTHER UBIQUITINATION FACTOR E4 1 1015 IPR045132 GO:0000151|GO:0030433|GO:0034450
Amo20g3393 1038 Coils Coil 518 545 - -
Amo20g3393 1038 PANTHER - 1 1015 - -
Amo20g3393 1038 MobiDBLite consensus disorder prediction 422 456 - -
Amo20g3393 1038 Pfam U-box domain 940 1011 IPR003613 GO:0004842|GO:0016567
Amo20g3393 1038 Pfam Ubiquitin elongating factor core 262 923 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Amo20g3393 1038 SUPERFAMILY RING/U-box 932 1012 - -
Amo20g3393 1038 MobiDBLite consensus disorder prediction 422 458 - -
Amo20g3393 1038 CDD RING-Ubox_UBE4A 942 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3393 Amo-Chr20 143114637 143120941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3393 1 1038 U-box Gene Family AT5G15400 76.499 0.0 1638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3393 K10597 - gmx:100806175 1803.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3393 20 143114637 143120941 Amo10g2736 10 92012237 92018553 hybridization