Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3385 ATGTCTTTGCTTTTGGAGCTTTATGAGCTTATTTCTGCTAAAGAAGCTGTGATCAATGGTGGTGATGAAATCAATGGACTTATAGCTTTGTTTCATCAAGTTTTTTATCAACTAGATCCTAAAGGTGGTCTTAAAGAACTAGTGGATCCTAGGCTTGGGGATAATTTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTTCAAGTAAAAAAGTTTCCTTGTTTGTTAAGGATATAACCCCTGATTCAGAAGACTTAGCTGCGAATCATGATGTCATGCAGATAGTTGAGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGAGGTTGGAAGGTTGTGTCCATACATGGAGACAATGCACAACATGATCGTACAAAGGCACTTTCATTATTCAAGAATGGGAGCTGCCCTTTAATGATTGCTACTGATGTGGCTGCATGTGGATTGGATATTCCAGATGTTGAAGTTGTTATCAACTATAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTAGACGAGCTAATAAAAAGGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGTCTTGCTGGGAAGCTTGTGAATGTATCAAGAGAAGCTGGACAAATTATGCCAGATGCCCTTTTAAAATTTGGCACACATGTAAAGAAAAAGGTATATTTTCTTCACTTCTCTCTATGCACCTGA 744 0.3777 MSLLLELYELISAKEAVINGGDEINGLIALFHQVFYQLDPKGGLKELVDPRLGDNLGLEIITQLIQFSSKKVSLFVKDITPDSEDLAANHDVMQIVENRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDNAQHDRTKALSLFKNGSCPLMIATDVAACGLDIPDVEVVINYSFPLTTEDYVHRIGRTRRANKKGVAHTFFTQQNKGLAGKLVNVSREAGQIMPDALLKFGTHVKKKVYFLHFSLCT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3385 247 Gene3D - 66 234 IPR027417 -
Amo20g3385 247 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 91 231 IPR001650 -
Amo20g3385 247 PANTHER BNAA08G07020D PROTEIN 97 238 - -
Amo20g3385 247 SMART helicmild6 111 192 IPR001650 -
Amo20g3385 247 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 97 238 - -
Amo20g3385 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 228 IPR027417 -
Amo20g3385 247 Pfam Helicase conserved C-terminal domain 96 192 IPR001650 -
Amo20g3385 247 CDD SF2_C_DEAD 97 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3385 Amo-Chr20 142963880 142967561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3385 90 200 Eukaryotic Initiation Factors Gene Family AT3G19760 36.036 1.32e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3385 K14811 - gmx:100806057 272.707