Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3378 ATGATGGAGAAGTTGCGGTTTGATAAGATGGCGGCAGTGGCGGTGGCTGCGGTGGTGGCGGTGACGGTGATGGCTGTGATGGGAGAAGACCTCCATAGGGTTGGAGGTTCTAAAGGATGGCGTCCTGATGTCAACTACACTGATTGGTTTGCTCATGAGAAGACTGTTTATGTTGGTGATTGGCTTATATTCTATTTTGACAAGCGATACTACAACGTTCTGGAAGTGAACAAGACAAGCTACGAGAAATGCATAGACAGAGATTTCATTAAGAACGTGACACGTGGCGGCCGCGACGTGGTCCATTTGACGGAGCCGAGGGACTACTACTTCCTCTCCAGCGGAGGATACTGCTTCCATCAAATGAGAGTTGCCATCAACGTTGTTGCCAAAGATGAGCGAAAAGACCAACCTGCCCCCATTCTTGCAACTGCATCCCCATCAGCACCTTCTCAGTACTCTGCCTCTTCCACTATTATGTTCACATGCATTTGGATTGTTCTTGTTAATGTGGTTTATGTGAGTTTGTTTAGTGAGAATTATTAG 546 0.4707 MMEKLRFDKMAAVAVAAVVAVTVMAVMGEDLHRVGGSKGWRPDVNYTDWFAHEKTVYVGDWLIFYFDKRYYNVLEVNKTSYEKCIDRDFIKNVTRGGRDVVHLTEPRDYYFLSSGGYCFHQMRVAINVVAKDERKDQPAPILATASPSAPSQYSASSTIMFTCIWIVLVNVVYVSLFSENY* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3378 181 Pfam Plastocyanin-like domain 42 118 IPR003245 GO:0009055
Amo20g3378 181 ProSiteProfiles Phytocyanin domain profile. 30 130 IPR003245 GO:0009055
Amo20g3378 181 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Amo20g3378 181 PANTHER EARLY NODULIN-LIKE PROTEIN 20 12 168 - -
Amo20g3378 181 Gene3D - 30 141 IPR008972 -
Amo20g3378 181 PANTHER BLUE COPPER PROTEIN 12 168 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3378 Amo-Chr20 142843125 142846352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3378 17 158 Phytocyanin Superfamily AT2G27035 44.595 2.96e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3378 - - ahf:112718354 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3378 20 142843125 142846352 Amo10g2702 10 91598431 91600740 hybridization