Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3372 ATGGGTTGCATCAATTCCAAGAATGCTGTGTCTGGGGACTCATCACCTTATTTATCACCTGTTGATCATGTGATTTTGGAACCTCTTCCTCCACCAGCAGTTTCAGTTGCAGGATCAAGGGGCCATTCTCATGTGGCAGGATCATCATTAGCAGATGAGAACAAGAAGAAATTGAAAAAGAACGCCTCCAAGAAGAGCAATGGCTCCTTTAGCATCAGGCTTGGATTCTCCAAGAGGCATGTTGATGCTGAACACAATGCTGCTGGTTGGCCAAGTTGGCTCACAGTTACTGCTGGTGAAGCTGTTCATGGATGGCTCCCTCTTAGAGCTGATTCTTTTCAAAAGTTAGATAAGATTGGACAAGGTACTTATAGCAGCGTGTTCAGAGCACGTGAAGTTGAAACAGGAAGGATGTTTGCTCTGAAGAAGGTGCGCTTTGACAATTTACAACCTGAGAGCATTAGATTCATGGCAAGAGAAATATCAATCCTTCGCAGGCTAGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTAAGCAATCTAGTAGCATATACCTTGTTTTTGAATACATGGAGCATGATCTTGCTGGCTTAGTATCGCGTCCTGATATTCTCTTCACTGACTCTCAGATAAAGTGTTACCTGCGACAGCTATTAAGTGGAATTGAGCACTGTCATATCCGTGGTATCATGCATCGTGACATTAAAGTATCAAATATCTTATTGAACAATGAAGGTATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTCCAAATAACAAGCATCAGTTAACCAGTCGTGTAGTAACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCGGTTGATTTGTGGAGTGTTGGTTGTGTATTTGCCGAACTTTTTCTAGGAAAACCAATCCTTAAGGGAAGAACTGAGGTTGAACAACTACACAAAATTTTTAAGCTGTGTGGATCTCCGCCGGACGATTTCTGGAAAAAGTATAAGCTTCCTCATGCAACAGTATTTAAACCTCAAACTACTTACGAAAGCTCTTTGCGTGAGAGGTGTGCCGAGTTTCCAGAAACTGCTGTTGATCTACTTGAGACTTTATTATCCATTGACCCCGCCAATCGTGGAACCGCCTCCTCTGCCCTGATGTCTGAGTATTTCAACACCAAACCTTATGCTTGCAATCCATCAAACTTGCCAAAGTATTCGCCTAGCAAAGAACTGGATGCTAAAAGTCGGGAAGACATGTCGAGGAAAAGGACCGATGATAAAATGCAAATGCGAGATGCTGCAACATCGAGAAGGCAACCAAGACGAGTCAAGAAATATTTGCGAGAACCAATTGATCATACTCAATCAGTTTCCAAAGAGCACATGCAGAATGGTCCTCATAATGTTCGTAGAAGTGATGGTAGATCACATATTCAAAAGGGCATAGGAGGACACAAAGACCATCTACACCCCGAAATGGATGCAGTCTCAGACCTTTCGCAGATGGTGAATATTGCAGATGGTAATGGCTTTACTGTACCGGCACAAGGCGGCTATGACTGGGTGAAAAGGAGAAAGCAAGATGCTTCATCTACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATCCAAACTTTGCTAAAGGAACTTATGATTTAAACAGACAAAGGATGACTGCTTTGGACAAGAGATATAATGACAAGCAAGGTTACCATGAAGAGACTCGCGTAACCATGGATTTTGATCCTTCCGAACTATTGAATCATCAGGGAAATACAGATCATGGTTCGCAAGTGAGTGACATGCGGCGCGAAGTTCGAAAATCAAGGTTTGGAAGAGAGATATGA 1875 0.424 MGCINSKNAVSGDSSPYLSPVDHVILEPLPPPAVSVAGSRGHSHVAGSSLADENKKKLKKNASKKSNGSFSIRLGFSKRHVDAEHNAAGWPSWLTVTAGEAVHGWLPLRADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNLQPESIRFMAREISILRRLDHPNIMKLEGIITSKQSSSIYLVFEYMEHDLAGLVSRPDILFTDSQIKCYLRQLLSGIEHCHIRGIMHRDIKVSNILLNNEGILKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPDDFWKKYKLPHATVFKPQTTYESSLRERCAEFPETAVDLLETLLSIDPANRGTASSALMSEYFNTKPYACNPSNLPKYSPSKELDAKSREDMSRKRTDDKMQMRDAATSRRQPRRVKKYLREPIDHTQSVSKEHMQNGPHNVRRSDGRSHIQKGIGGHKDHLHPEMDAVSDLSQMVNIADGNGFTVPAQGGYDWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLNRQRMTALDKRYNDKQGYHEETRVTMDFDPSELLNHQGNTDHGSQVSDMRREVRKSRFGREI* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3372 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Amo20g3372 624 Gene3D Transferase(Phosphotransferase) domain 1 196 437 - -
Amo20g3372 624 PANTHER CELL DIVISION PROTEIN KINASE 1 568 - -
Amo20g3372 624 PANTHER CYCLIN-DEPENDENT KINASE 1 568 - -
Amo20g3372 624 MobiDBLite consensus disorder prediction 407 449 - -
Amo20g3372 624 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3372 624 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3372 624 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Amo20g3372 624 MobiDBLite consensus disorder prediction 593 624 - -
Amo20g3372 624 MobiDBLite consensus disorder prediction 607 624 - -
Amo20g3372 624 MobiDBLite consensus disorder prediction 416 449 - -
Amo20g3372 624 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3372 624 MobiDBLite consensus disorder prediction 35 66 - -
Amo20g3372 624 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Amo20g3372 624 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Amo20g3372 624 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3372 Amo-Chr20 142687517 142692794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3372 105 475 Core Cell Cycle Gene Families AT5G10270 44.186 1.50e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo20g3372 Pkinase 5.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3372 - - gmx:100790917 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3372 20 142687517 142692794 Amo20g3372 20 142687517 142692794 ECH