Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3369 ATGCGGGATGGCCACTTTCTGAAGACAAGTTGTGGGAGCCCTAATTATGCTGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTCTATATGCCCTTCTCTGYGGCACACTTCCCTTTGATGATGAAAACATTCCRAACCTCTTCAAGAAAATAAAGGGTGGCATATACACCCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACTATACCTGAAATACGTCAACACCCATGGTTCCAAGCTCGTCTTCCGCGATATTTAGCAGTGCCACCACCWGATACAATGCAACAAGCCAAAAAGATTGACGAAGAGCTACTTCAGGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATCTCTACGCAACAGGATCCAAAATGAGGGTACTGTGGCATACTACTTGTTATTGGATAACCGGTTCCGTGTTTCTAGCGGCTATCTTGGAGCTGAGTTTCAAGAGACTATGGATGCTGGTTTCAATCGTAATCATTCCACTGAAGTTTCTTCTCCAGTTGCTGGGCACCGCTTTCCAGGTTATATGGACTATCAAGTAGGAATGAGACCACAGATCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCCCGTGAAATAATGACCGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGCTGGAAGAAGATAGGGCATTACAACATGAAATGCAGATGGGTTGCTGGYATTCCTGGTCATCAGGAAGGAATGGTTAACAATTCTCTGCATAGTAACCATTACTTYGGGAATGACTCCAACATCATTGAGAATGATGCTGTTTSYAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTCTACAAAACTCGGGAAGATAAGTATCTGCTTGACCTTCAGAGGGTTCAGGGCCCCCAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTGCACAGCTACGTGTTCTCTAA 1044 0.4425 MRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEELLQEVVNMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDAGFNRNHSTEVSSPVAGHRFPGYMDYQVGMRPQIPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHQEGMVNNSLHSNHYFGNDSNIIENDAVXKSNVVKFEVQLYKTREDKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3369 347 PANTHER SERINE/THREONINE KINASE 3 346 - -
Amo20g3369 347 Gene3D Kinase associated domain 1, KA1 228 345 - -
Amo20g3369 347 Pfam Protein kinase domain 5 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3369 347 Gene3D Transferase(Phosphotransferase) domain 1 1 184 - -
Amo20g3369 347 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 126 166 IPR015940 -
Amo20g3369 347 SUPERFAMILY KA1-like 162 346 IPR028375 -
Amo20g3369 347 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 346 - -
Amo20g3369 347 Pfam Kinase associated domain 1 304 346 IPR001772 -
Amo20g3369 347 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 298 346 IPR001772 -
Amo20g3369 347 CDD UBA_SnRK1_plant 127 167 - -
Amo20g3369 347 SMART serkin_6 3 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3369 347 SUPERFAMILY Protein kinase-like (PK-like) 5 122 IPR011009 -
Amo20g3369 347 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3369 347 SMART uba_6 128 165 IPR015940 -
Amo20g3369 347 Pfam UBA/TS-N domain 127 163 IPR015940 -
Amo20g3369 347 CDD AMPKA_C 222 344 - -
Amo20g3369 347 SUPERFAMILY UBA-like 115 164 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3369 Amo-Chr20 142567596 142571851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3369 1 106 CBL-interacting serine-threonine protein kinases AT2G26980 51.887 4.09e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Amo20g3369 Pkinase 4.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3369 K07198 - gmx:100796687 655.595