Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3363 ATGGAGGCTTCGCATTCTGTTAAGGTTATAACGGTGTCACAGGACGGAAAAGGAGACTACCGGACGGTGCAGGAGGCGATCGATGCGGTGCCGGTAGGCAACACTCGCCGGACGGTGATCCGGGTGGCCCCGGGAATCTACAGGCAGCCTGTTTATGTGGCGAAGACAAAGAGGTTCATCACGCTTGCCGGCATATTTCTTGAGGACACTGTTCTCACATGGAATAACACTGCTACAAGAATCCAACACCCCAAAGGTGAAAAGGTGATAGGAGGAGGAACGTTTGGTTGTGGCAGCACCATTGTGGAAGGTGAAGACTTCATTGCTGAGAACATTACCTTCGAGAATTCTTCCCCTCAGGGTTCAGGGCAAGCTGTGGCTATGAGAGTAACAGCTGATCGATGTGCTTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATTATGGCAAACAATATTTTAGAGATTGCTACATTGAAGGAAGTGTGGACTTCATTTTTGGCAATAGCACTGCCCTCTTGGAGCATTGTCATATCCACTGCAAATCCCAAGGCTTCATAACAGCACAGAGCAGAAAATCTCCACATGAAACAACTGGTTTTGTGTTCCAAAGATGTGTTATCACAGGTAATGGGGGAAGGGAATATGCATATCTTGGAAGACCATGGGGACCCTTTGCAAGAGTGGTCTTTGCATTCACTTATATGGATCCATGTATACAACTTGCTGGTTGGAACAATTGGGGTAATGCTGACAATGAGAAAACTGCTTGCTTTTTTGAATACAGGTGTTTCGGGCCGGGTTATTGCCGATCAAAACGGGTCAAATGGGCCAGAGAAGAAGCAGAACAGTTCTTGCTTCATAGCTTCATTGATCCAGAAGCAAATAAACCTTGGCTTGCTCAAAGAATGGCTTTCAAGGTTCCATATTTTGCTTAG 951 0.4616 MEASHSVKVITVSQDGKGDYRTVQEAIDAVPVGNTRRTVIRVAPGIYRQPVYVAKTKRFITLAGIFLEDTVLTWNNTATRIQHPKGEKVIGGGTFGCGSTIVEGEDFIAENITFENSSPQGSGQAVAMRVTADRCAFYNCRFLGWQDTLYLHYGKQYFRDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSPHETTGFVFQRCVITGNGGREYAYLGRPWGPFARVVFAFTYMDPCIQLAGWNNWGNADNEKTACFFEYRCFGPGYCRSKRVKWAREEAEQFLLHSFIDPEANKPWLAQRMAFKVPYFA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3363 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 314 - -
Amo20g3363 316 Pfam Pectinesterase 10 288 IPR000070 GO:0030599|GO:0042545
Amo20g3363 316 ProSitePatterns Pectinesterase signature 2. 163 172 IPR033131 -
Amo20g3363 316 Gene3D - 4 311 IPR012334 -
Amo20g3363 316 SUPERFAMILY Pectin lyase-like 8 299 IPR011050 -
Amo20g3363 316 PANTHER PECTINESTERASE 9 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3363 Amo-Chr20 142446820 142452978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3363 8 309 Carbohydrate Esterase AT5G47500 39.365 3.19e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3363 K01051 - gmx:100810259 538.495