Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3350 ATGGAGGGATCCATAGGCCTAAGAAAAGGTGCATGGGCTAAGGTGGAAGATGACCTTCTAAGAGCTTGTGTTGAACAATATGGAGAAGGAAAGTGGCACCTAGTTCCTTCTAGAGCGGGGTTGAACAGATGCCGCAAAAGCTGTAGATTGCGATGGTTGAATTATCTGAAACCAAATATAAAGCGAGGAGAGTTCGCTGAAGATGAAGTTGATCTCATGATTAGAATGCATAGACTTTTGGGAAACAGATGGTCCTTAATTGCTGGAAGACTTCCGGGAAGAACGCCAAACGATGTGAAGAATTACTGGAACACCTATGTTCGAAGGAATAATAAGCACACTTCATCCTCATCAACACCATCAGTACCCTCTCCTTCATCAGTGGTGACGACAGTGAAACGTCATGACCATATTAATCATCAGGTAATAAAACCTCATCCCCGAACTTTCTCGAAAGCATCGCCATGGTTATTATTAAAGAAAACATCTGCAAGTGGTGATCATAATAATAGCAAGCAAAGGGATGGGGCCAAAGCAGAAGAAGAGTGCACCGATAATAATAATAATGGTTCTGGTGGTGGATGTGATGATGGGGACACGTGTCGGGACAAGAACGGTGGCAAAGGGGATGAAGAGAAGTTGAACGACGGATGCTTACTCTCAGTCTCAGGTGCTGAGGAAGAAGAAGAAGAAGAAGAAGAAGACTGGAAGCTGCTTTTACCTGACTTCAATTGGGATGCTCATAATGATGATCACTTCTTGAAGGACGCTTCTGATGCTGACCAGGATATGCTTATTAATGTCCATGGTCAAACTTGGAGTGATATCCTTCTTGATATCAATTTGTGGGATCCACAATAA 861 0.4309 MEGSIGLRKGAWAKVEDDLLRACVEQYGEGKWHLVPSRAGLNRCRKSCRLRWLNYLKPNIKRGEFAEDEVDLMIRMHRLLGNRWSLIAGRLPGRTPNDVKNYWNTYVRRNNKHTSSSSTPSVPSPSSVVTTVKRHDHINHQVIKPHPRTFSKASPWLLLKKTSASGDHNNSKQRDGAKAEEECTDNNNNGSGGGCDDGDTCRDKNGGKGDEEKLNDGCLLSVSGAEEEEEEEEEDWKLLLPDFNWDAHNDDHFLKDASDADQDMLINVHGQTWSDILLDINLWDPQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3350 286 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Amo20g3350 286 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 183 - -
Amo20g3350 286 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 183 - -
Amo20g3350 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Amo20g3350 286 CDD SANT 64 107 IPR001005 -
Amo20g3350 286 Gene3D - 9 61 - -
Amo20g3350 286 MobiDBLite consensus disorder prediction 110 130 - -
Amo20g3350 286 CDD SANT 11 56 IPR001005 -
Amo20g3350 286 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Amo20g3350 286 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Amo20g3350 286 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Amo20g3350 286 SMART sant 61 109 IPR001005 -
Amo20g3350 286 SMART sant 8 58 IPR001005 -
Amo20g3350 286 Gene3D - 64 136 - -
Amo20g3350 286 MobiDBLite consensus disorder prediction 162 198 - -
Amo20g3350 286 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Amo20g3350 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Amo20g3350 286 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3350 Amo-Chr20 142248108 142252998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3350 2 151 MYB Transcription Factor Family AT1G66370 58.278 1.76e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo20g3350 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3350 - K16166 adu:107471154 528.48