Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3330 ATGGAGATAATCACCAACAACGCCACCACCACCATAACAAACCCACCAAAATCACCAGAACCCGAATCAGAAACTCCGACCCGGATTCAACCCACAAACACTAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGTCACCACCCTCCACAACACTACCACCACCAACTCGCAAGCCCAACCGCCGTTACCGCCGCCGTGGCGGTTACCTATAAGGAATGCTTGAAGAATCACGCCGCTAGTCTCGGTGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCGCCAACTGCTACCGCCGGCGATCCAACCTCCATCAAGTGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGATCCCGACGAGCCACCACCACCACCACCTCTCTCTCCTGTAATCGAGTACCAACCTCTCCACCGCCACCACCCTCCACCACCAGCTCCGCCACCTCCTCCGTTCCACCACCACCACCACCGGAGCCCTAACTCCGCCTCACCACCTCCGATCTCCTCTTCCTACTACCCTTCCGCACCGCACATGCTCCTCGCTTTGTCCTCGGGCGGCGGCCTCTCCGTTCCACCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACCATCTAAGTTCCCGAAAACGGTTCAGAACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCACGTGTTCGCGGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAGGAATTTTGCCATGAAGTCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTTGGAAAAAGAGAAAGAGAACAAGGTAATACTAAGAATGTTCTAGAAGGTCCTGGAATCAACGGTGCTGATGACGACAACAACAACAATAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGATGATGAACGGTGGTGATGGTAGCGGTCATGATGATGATGGTAGCGCTGATGCAAACGGTGCCGGTACTAATGGCTCTTCTTCTTCTTCTTGA 1041 0.5466 MEIITNNATTTITNPPKSPEPESETPTRIQPTNTKPVSFSNGVLKRHHPPQHYHHQLASPTAVTAAVAVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPPPLSPVIEYQPLHRHHPPPPAPPPPPFHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHHLSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEVGVDRGVLKVWMHNNKNTFGKREREQGNTKNVLEGPGINGADDDNNNNNKSNGLNGGMMMMMNGGDGSGHDDDGSADANGAGTNGSSSSS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3330 346 MobiDBLite consensus disorder prediction 1 35 - -
Amo20g3330 346 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Amo20g3330 346 MobiDBLite consensus disorder prediction 188 218 - -
Amo20g3330 346 Gene3D - 203 276 - -
Amo20g3330 346 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Amo20g3330 346 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 302 - -
Amo20g3330 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Amo20g3330 346 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 216 273 IPR006455 -
Amo20g3330 346 SUPERFAMILY Homeodomain-like 205 277 IPR009057 -
Amo20g3330 346 MobiDBLite consensus disorder prediction 297 312 - -
Amo20g3330 346 MobiDBLite consensus disorder prediction 277 346 - -
Amo20g3330 346 MobiDBLite consensus disorder prediction 122 175 - -
Amo20g3330 346 MobiDBLite consensus disorder prediction 127 154 - -
Amo20g3330 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3330 Amo-Chr20 141674186 141675830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3330 16 325 ZF-HD Transcription Factor Family AT3G28920 51.572 9.37e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo20g3330 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3330 - - ahf:112783874 473.396