Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3324 ATGGAGGAAAGGAATATTGAGATGGAGAATAAGATTGAAGATGAGATGATGCCAGGTTTCAGATTTCACCCAACAGATGAAGAGATTGTTGGTTTTTATCTAAAAAGAAAAATTCAGCAAAAATCTCTTCCTATTGAATTGATCAAGCAAGTTGATATCTATAAGTATGAGCCATGGGACCTTCCAAAGGTGGCAAGTAATGGAGAGAAAGAATGGTATTTCTACTGTCCAAGAGACAGGAAATACAGAAACAGTGCAAGGCCCAACAGAGTGACAAGATGTGGGTTTTGGAAGGCCACTGGAACGGACAGGCCCATTTACTCATCTGAGGCCCAATCCATTATTGGTTTGAAGAAATCACTTGTTTTCTACAGAGGCAGAGCTGCTAAGGGTTTCAAAACTGATTGGATGATGCATGAGTTTAGGCTCCCTTCTCTTTCTTCTGATTCAGCCAAGAAATGCTCTGACAAAACTACCCCTGCTTCTGATTCATGGGCAATATGTAGGATATTCAAGAAAACAAACACAATGTCCATGGCACAAAAAGCCTCATTATCTCATCATCCTTATAATTGGAATCATCATAATCAATTATTTGATGATATACTCACACATCAACAACACCAACACCCTATTATTCCAAACTCCAACAACAACTTCATCTTCTACAATTCCAATTCTACCCTTGAACCCACAAAAGAAATTGATGCTACTACTACTAGTAGCTCCATTGTTATTTCTTCCAACATAGGCCTTCATGAAGATCCAAATCATCATCATTACAATAATAATAGTAGTGGGTTCTCATCTTCTTCAATTATGATGATGCAACCAAACATCATGGCAACCTCAGATGATGATGATTCAGGTGTAATTACAACAATTGCTGGCTTCCCATTCAATTTGCCTCCAAATGATGATGATGCTGCTTGGAATAATAATATTAAGCCTAATACTACTCTGCCATGGGACTACTTATCAGACATGTCCACTACCTATTCCACTAATAAATCTTACACTTAA 1023 0.3783 MEERNIEMENKIEDEMMPGFRFHPTDEEIVGFYLKRKIQQKSLPIELIKQVDIYKYEPWDLPKVASNGEKEWYFYCPRDRKYRNSARPNRVTRCGFWKATGTDRPIYSSEAQSIIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPSLSSDSAKKCSDKTTPASDSWAICRIFKKTNTMSMAQKASLSHHPYNWNHHNQLFDDILTHQQHQHPIIPNSNNNFIFYNSNSTLEPTKEIDATTTSSSIVISSNIGLHEDPNHHHYNNNSSGFSSSSIMMMQPNIMATSDDDDSGVITTIAGFPFNLPPNDDDAAWNNNIKPNTTLPWDYLSDMSTTYSTNKSYT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3324 340 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Amo20g3324 340 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Amo20g3324 340 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Amo20g3324 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 205 - -
Amo20g3324 340 SUPERFAMILY NAC domain 12 173 IPR036093 GO:0003677|GO:0006355
Amo20g3324 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3324 Amo-Chr20 141556449 141559118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3324 1 187 NAC Transcription Factor Family AT1G26870 68.783 5.15e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g3324 NAM 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3324 - - aip:107621433 583.948