Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3316 ATGTCTAGCAGAAGGTCAAGGCAACAATCAGGGTCTAATAGAATCTCCGATGACCAAATCATCGAACTTGTTTCAAAGTTGCGCCAACTTGTTCCTGAGATTCGAGATAGGCGCTCTGATAAGGTTTCAGCTTCTAAGGTTCTACAAGAGACATGCAACTATATAAGAAACTTACACAGAGAGGTTGATGATTTAAGCGAACGTTTGTCTCAATTGTTGGCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATAAGGAGCCTAATTAACCAATAA 279 0.4086 MSSRRSRQQSGSNRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSAEAAIIRSLINQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3316 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 77 IPR036638 GO:0046983
Amo20g3316 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Amo20g3316 92 Gene3D - 2 87 IPR036638 GO:0046983
Amo20g3316 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Amo20g3316 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Amo20g3316 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Amo20g3316 92 CDD bHLH_AtPRE_like 9 75 - -
Amo20g3316 92 Coils Coil 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3316 Amo-Chr20 141354309 141356361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3316 14 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.923 1.87e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g3316 HLH 7.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3316 - - gmx:100794486 154.836