Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3307 ATGACAAGACTTTCCTTAGACCACAGTAATTGTTTTGATTTAATTTCATCCATTTCTTTCATACACTCGTCAATGGTGGGAGCTTATTACAGATTCCATTTCCCTCAATTGTCTCTCATTTCGACTCAACCTCGCTTTGACATGGCAAGTTTTAAGGAACTCTCAATGGGTGGAGTAGTCTTGAATAATTCGAGAAGAAATTCATCAGAGGAAAGAAAGAAGAAAGGTGATGAAGATGATTTAGGGTTTAAAAGAAAACTCAAACTTTGGTTTGGTTGCATGACACTGATGATCATGAGATCAAAAGCAAAAGATTCTGCGAGTGATCACAAATATAAAGCAGATGGAATAGAGGAGAAAATTATTGGTCCCATACCATCAACTCCAACCAATTCACCAATTATTAATGAAGAAAGGGTGGTTAATCCAAAAAGCTTTACATACAAACAGCTTAAATTGGCAACAAAAAATTTTAAGAGAGAGCATTTTCTTGGTGAGGGAGGATTTGGAAGTGTCTACAAAGGATGGCTTAGTAGAGATGATGCTATGACTCCAACAAAACCTGGAATGGGGATCCCTGTTGCTATAAAATCTCTCAACCAATTTGGTCTTCAGGGCCATCAAGAATGGCTGGCTGAAGTAAACTATCTGAGTCAGCTAAAGCACCCAAATTTAGTGAAACTAATTGGATTTTGCAATGAAGATGATAAGATGCTGCTTGTTTATGAGTTCATGCCTCGTGGAAGCCTTGAATCCCATCTCTTTAGGAGAGCTGTGGTGTTTCCATGGTCCATCAGAGTGAGAATAATGCTTGATGCTGCAAAGGGACTTGCATATCTTCATGAGAAGACTCAGAATAAGAATGCAGTCATATTTCGAGACTTCAAGACTTCTAATATTCTCTTGGATAAGGAGTTCCATGCAAAGCTATCGGACTTTGGTTTTGCAAGGGATGGACCTGAGGGAGATAAAACTCACATATCAACTAGAGTCATGGGAACCCATGGCTATGCTGCCCCAGAATATGTCATGAATGGGCACCTGAGCACGAAGAGTGATGTGTATAGTTTTGGAGTGGTGATGCTGGAGATGGTGACAGGAAGGAAGGTGATAGACAGACAGAGGCCACATAGTGAGATGAACTTGGTGAGATGGGCACTGCCCTTAATAAGGGACAATGGAAGGAACAGCCATATACTCCTCATTGACCCAAGGCTTCATGGGCATTACTCCGCAAAGGCTTCCCTTAAGGCACTTAAGTTGGCCTCTCGCTGCCTCCGCTTCAACCCTTCCATGAGACCTACCATGGATTCAGTTGTTCAATCCATCATCAACTTCCCTCAAGAAGCCTCACCTCTTCCAATTCCTCCTCCTCCTCCTCCTCATCTTAATACTAACTCCAACAAGTATGGTCTTGTTTCTTCTGCTTCTGCTTCCAGGACCGACGTGCCGACTCGCTTTCAGGCTTCCCCTTGCCACCTCAACCACCACCACCAAGCTCATGTTGCTTCAACTTCATCAACTCCACCAAGGCCTAATGTTAGAATTGATCAAAGGCGTTGA 1563 0.4248 MTRLSLDHSNCFDLISSISFIHSSMVGAYYRFHFPQLSLISTQPRFDMASFKELSMGGVVLNNSRRNSSEERKKKGDEDDLGFKRKLKLWFGCMTLMIMRSKAKDSASDHKYKADGIEEKIIGPIPSTPTNSPIINEERVVNPKSFTYKQLKLATKNFKREHFLGEGGFGSVYKGWLSRDDAMTPTKPGMGIPVAIKSLNQFGLQGHQEWLAEVNYLSQLKHPNLVKLIGFCNEDDKMLLVYEFMPRGSLESHLFRRAVVFPWSIRVRIMLDAAKGLAYLHEKTQNKNAVIFRDFKTSNILLDKEFHAKLSDFGFARDGPEGDKTHISTRVMGTHGYAAPEYVMNGHLSTKSDVYSFGVVMLEMVTGRKVIDRQRPHSEMNLVRWALPLIRDNGRNSHILLIDPRLHGHYSAKASLKALKLASRCLRFNPSMRPTMDSVVQSIINFPQEASPLPIPPPPPPHLNTNSNKYGLVSSASASRTDVPTRFQASPCHLNHHHQAHVASTSSTPPRPNVRIDQRR* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3307 520 ProSiteProfiles Protein kinase domain profile. 158 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3307 520 PANTHER OS01G0588500 PROTEIN-RELATED 128 487 - -
Amo20g3307 520 Pfam Protein kinase domain 159 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3307 520 MobiDBLite consensus disorder prediction 496 520 - -
Amo20g3307 520 SUPERFAMILY Protein kinase-like (PK-like) 143 471 IPR011009 -
Amo20g3307 520 ProSitePatterns Protein kinases ATP-binding region signature. 164 197 IPR017441 GO:0005524
Amo20g3307 520 Gene3D Phosphorylase Kinase; domain 1 143 244 - -
Amo20g3307 520 Gene3D Transferase(Phosphotransferase) domain 1 245 451 - -
Amo20g3307 520 PANTHER TYROSINE KINASE FAMILY PROTEIN 128 487 - -
Amo20g3307 520 MobiDBLite consensus disorder prediction 499 513 - -
Amo20g3307 520 CDD STKc_IRAK 164 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3307 Amo-Chr20 141112908 141120427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3307 91 443 Glycoside Hydrolase AT3G07070 44.986 8.79e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo20g3307 Pkinase 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3307 - - ahf:112786408 958.747