Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3302 ATGGAAATGATGACAAAGAAAGAAGAGAACATGAAGAGGAGTTGGATGTCAATGCCACAAAGTGAGTTCCAAGTAGCAGCAAGGGGTAACAAGAGGAGAAGGAGAGAGCTTACTGCAGTTGCACTAACAAATGAAGAAAACCAAAGTAAGGAACAAACATTGCAGCCACACCAACAGCAACAGAAGGTTGATCAAAATTCCACTACCACAATCTACAAGAGAAGTTCAAATTCAGGACATAGATGGACAGGTCGATACGAGGCTCACTTATGGGACAAGCTCTCTTGGAACATAACACAAAGGAAGAAAGGGAAGCAAGTTTACCTTGGGGCATATGATGAAGAAGAATCTGCTGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCGATATCAGATTATGAGAAAGAGATTGAGATAATGCAAACTATGACAAAAGAAGAGTACTTGGCTACTCTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCACGGATCGGAAGAGTTTTTGGAAACAAATATCTCTACCTAGGCACCTACAGCACCCAAGAAGAAGCTGCTCGTGCTTATGACATAGCAGCCATCGAGTATAGAGGGATCCATGCTGTAACCAACTTTGATTTGAGTTCTTACATACGGTGGTTAAAGCCTTCAGGGGGGAACATCTCAGAATTAAAACAGGAATCAGAGGTAACGCCAGAGTCTCAGACAGTGGTATCTCAAACTCATTCACCAATAGAGGGGTCTAAATCCTTGGCCGTTCATACATTTAGTCCAGATTATCTCGATTTACCTCAAAATCATGAAATCTTTGAAAACAAAACATTCCAATTCTCCAGCAATAAGTCATCTTCTCCAACCGCACTCAGCCTCCTCCTCCGATCATCGATATTTAGAGAATTGGTTGAAAAGAATTTGAACATGTGTGGAGATGAAACTGATGGGGAAGACAAAAAGGATCAACGCCCACAGATAACTAGTGATGATGAGTTGGGTGGGATCTTTTACGATGGAATTAGCAATCTCCCTTATCTGTGA 1116 0.4185 MEMMTKKEENMKRSWMSMPQSEFQVAARGNKRRRRELTAVALTNEENQSKEQTLQPHQQQQKVDQNSTTTIYKRSSNSGHRWTGRYEAHLWDKLSWNITQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSSYIRWLKPSGGNISELKQESEVTPESQTVVSQTHSPIEGSKSLAVHTFSPDYLDLPQNHEIFENKTFQFSSNKSSSPTALSLLLRSSIFRELVEKNLNMCGDETDGEDKKDQRPQITSDDELGGIFYDGISNLPYL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3302 371 MobiDBLite consensus disorder prediction 335 352 - -
Amo20g3302 371 Pfam AP2 domain 80 131 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 Pfam AP2 domain 174 225 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 CDD AP2 174 235 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 MobiDBLite consensus disorder prediction 25 79 - -
Amo20g3302 371 ProSiteProfiles AP2/ERF domain profile. 71 139 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 SUPERFAMILY DNA-binding domain 80 141 IPR016177 GO:0003677
Amo20g3302 371 ProSiteProfiles AP2/ERF domain profile. 175 233 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 SUPERFAMILY DNA-binding domain 174 235 IPR016177 GO:0003677
Amo20g3302 371 MobiDBLite consensus disorder prediction 335 356 - -
Amo20g3302 371 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 366 - -
Amo20g3302 371 SMART rav1_2 80 145 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 SMART rav1_2 175 239 IPR001471 GO:0003700|GO:0006355
Amo20g3302 371 Gene3D AP2/ERF domain 174 235 IPR036955 GO:0003700|GO:0006355
Amo20g3302 371 Gene3D AP2/ERF domain 76 141 IPR036955 GO:0003700|GO:0006355
Amo20g3302 371 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 366 - -
Amo20g3302 371 MobiDBLite consensus disorder prediction 41 79 - -
Amo20g3302 371 CDD AP2 80 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3302 Amo-Chr20 140934351 140936367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3302 69 237 AP2-EREBP Transcription Factor Family AT5G57390 69.231 1.13e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo20g3302 AP2 7.5e-12 CL0081