Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3300 ATGGCGGGAAGTGCAACTAACAAGGTTACATTTGTTTTCTTGGCTACTTTGGCCATTGTTGTTCGATGCATTGAAGCTGGTGGGAATGTGGTGTTTGATGATCATCTCAGAGAACAAGAGAGGATTGCTTATGAACTTGCCCTCAAAACTTACGTCCCAGACCCTTTGGAAGTTACATTCGAACTCAACCATCATGTTAACTTATTCATGAACAAAACTGAATCAAGAAGGAATCTGATGAAGATAAAGAGAAGGAACAGACGTTTTATCTGTGAAGCCACCAACCCCATAGACGGTTGCTGGAGGTGCGATCCCAATTGGGCCAGAAACCGCTTCAGGCTGGCGGATTGCGCAAAGGGATTCGGAAGAAGAGCCAAGGGAGGCTTAGGCGGCCCAATCTACGTTGTCACTGACGAATCCGACGACGACATGATAAACCCTAGACCCGGAACCCTAAGATACGGAGTCCTCCTGAGGGGACCAGTGTGGATCATATTTGCAAGAAGCATGTTGATCAACTTGAAGCAAGAGTTGATCGTGACCTCCGACAAGACCATCGACGGGCGCGGCGCCAACATTCAGATCAGGGGCGGCGCCGGGCTAACGTTGCAGTTCGTGAACAATGTTATCATTCATGGGATTCGCATCAAGGGAGTGAGGTCCAGATCTGGTGGTATGATAAGGTCAAGTGCAGATCATATTGGTCTAAGGATGAGGAGTGATGGTGATGGCATCACCATCTTTGGGTCAAGCAACGTTTGGATCGATCATATCTCCATGTCTGACTGCGAAGATGGCCTCATCGATGTTGTTGCCGGTTCCACTGGCATCACCATCTCAAATTGCCATATGACCAAACACAACGATGTGATGTTGTTTGGAGCTGATGACAGATACACAAGGGACAAGATAATGCAAGTGACGGTGGTATTCAACCACTTCGGACAAGGATTGATTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTTAACAACGACTACACCCACTGGATCATGTACGCCATTGGAGGAAGCTCAAACCCAACAATTCTAAGCCAGGGCAACCGCTTCATCGCTCCGAACAACATGGCGGCCAAGGAGGTCACCCACCGCGACTACGCCAGGCCCGAGGAGTGGGCCAACTGGCAGTGGCGCTCGGAGAATGACCTCTTCATGAACAACGCCAGGTTTGTTGAGTCTGGAGCTCCAATTACCAATCTACCCTTCAGGGGGTTCCTCATGACCCCTCGACATGGTTCTCATGCTAACAGACTCACTAGTTATGCTGGTGCTCTTACTTGCGTTGTTGGCAGGCCTTGCTAG 1332 0.494 MAGSATNKVTFVFLATLAIVVRCIEAGGNVVFDDHLREQERIAYELALKTYVPDPLEVTFELNHHVNLFMNKTESRRNLMKIKRRNRRFICEATNPIDGCWRCDPNWARNRFRLADCAKGFGRRAKGGLGGPIYVVTDESDDDMINPRPGTLRYGVLLRGPVWIIFARSMLINLKQELIVTSDKTIDGRGANIQIRGGAGLTLQFVNNVIIHGIRIKGVRSRSGGMIRSSADHIGLRMRSDGDGITIFGSSNVWIDHISMSDCEDGLIDVVAGSTGITISNCHMTKHNDVMLFGADDRYTRDKIMQVTVVFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWIMYAIGGSSNPTILSQGNRFIAPNNMAAKEVTHRDYARPEEWANWQWRSENDLFMNNARFVESGAPITNLPFRGFLMTPRHGSHANRLTSYAGALTCVVGRPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3300 443 Pfam Pectate lyase, N terminus 32 79 IPR007524 GO:0030570
Amo20g3300 443 SMART amb_all 169 366 IPR002022 -
Amo20g3300 443 PANTHER PECTATE LYASE 6 443 - -
Amo20g3300 443 Gene3D - 94 436 IPR012334 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Amo20g3300 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Amo20g3300 443 Pfam Pectate lyase 176 360 IPR002022 -
Amo20g3300 443 SUPERFAMILY Pectin lyase-like 85 437 IPR011050 -
Amo20g3300 443 PANTHER PECTATE LYASE 18-RELATED 6 443 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3300 Amo-Chr20 140887564 140891630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3300 11 443 Polysaccharide Lyase AT1G14420 54.688 1.19e-176 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3300 K01728 - gmx:100810615 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2177 11 119743220 119745671 Amo20g3300 20 140887564 140891630 ECH
Amo13g4802 13 146257634 146273428 Amo20g3300 20 140887564 140891630 ECH
Amo20g3300 20 140887564 140891630 Amo20g3300 20 140887564 140891630 ECH
Amo20g3300 20 140887564 140891630 Amo10g2659 10 90769419 90773246 hybridization