Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3272 ATGACAACAACAAGCAATGAAGAGAGTATTCCTTCCACTCCAAAAGTCAGTGAGGAGTTGAAGGTAGCTTCTTGTTTGAGAAAATTCACATTCAATGGACTTAAGGTGGCAACTCGGAATTTCAGACCGGAGAGTCTTCTTGGAGAGGGAGGGTTTGGTTGTGTATTCAAGGGTTGGATTGAGGAGAATGGAATTGCACCTGTTAAACCGGGTACCGGTCTTACCGTTGCAGTCAAGACCCTGAACCACAATGGAAATCAGGGTCACAAAGAGTGGCTTGCTGAATTAAACTATCTTGGTGATCTTGTCCATCCTAATCTTGTTAAATTGATTGGTTTCTGTATAGAAGATGACCAGAGATTATTGGTTTACGAGTTTATGCCCCGAGGCAGTTTGGAGAATCACCTCTTTAGAAGGCCCCTACCGCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTTCATGAAGAGGCTCAGAGGCCAATAATCTATCGCGATTTCAAGACATCCAATATCCTATTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTTGCCAAAGATGGCCCTGAGGGGGAAAAGACACATGTATCAACAAGAGTCATGGGAACATATGGTTATGCTGCTCCGGAGTATGTCATGACCGGACATTTGACATCAAAAAGTGATGTCTACAGTTTCGGAGTGGTGCTTCTTGAAATGCTCACTGGCCGCCGAGCAATCGATAAGAGAAGACCAAATGGAGAACACAATCTGGTTGAGTGGGCTAGACCTGTTCTCGGAGATCATAGGATCCTATTCCGGATAGTCGATCCCCGGCTTGAAGGGCACTTCTCGGTTAAAGGTGCACAGAAAGCTGCCCAGCTAGCTGCTCAATGCCTTAGCCGCGACCCGAAATCCAGACCTTTGATGAGTGAAGTTGTTCAAAGTTTAAAGCCATTGCCAAACCTTAAGGATATGGCCATTTCTTCTTACCACTTCCAGGTCACGCGAGTCGAGCGTACTTTCTCCATGCCAAATCATAAAAACGGCATCAAAACGCAGTTAGTAGCTTTACCAAAGAAAGGTCAACCTGTAAGGACATTGTCAACTCCAAATGTTCCACATGGTTCTCCATATCTTAATTATAGCAAGTCTCCAAAACCAAAGGAGTAA 1185 0.4447 MTTTSNEESIPSTPKVSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGIAPVKPGTGLTVAVKTLNHNGNQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAIDKRRPNGEHNLVEWARPVLGDHRILFRIVDPRLEGHFSVKGAQKAAQLAAQCLSRDPKSRPLMSEVVQSLKPLPNLKDMAISSYHFQVTRVERTFSMPNHKNGIKTQLVALPKKGQPVRTLSTPNVPHGSPYLNYSKSPKPKE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3272 394 Pfam Protein kinase domain 44 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3272 394 Gene3D Transferase(Phosphotransferase) domain 1 127 342 - -
Amo20g3272 394 PANTHER RECEPTOR-LIKE KINASE PLANT 2 386 - -
Amo20g3272 394 CDD STKc_IRAK 47 324 - -
Amo20g3272 394 PANTHER OS01G0588500 PROTEIN-RELATED 2 386 - -
Amo20g3272 394 MobiDBLite consensus disorder prediction 369 383 - -
Amo20g3272 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Amo20g3272 394 ProSitePatterns Protein kinases ATP-binding region signature. 47 79 IPR017441 GO:0005524
Amo20g3272 394 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3272 394 SUPERFAMILY Protein kinase-like (PK-like) 16 321 IPR011009 -
Amo20g3272 394 Gene3D Phosphorylase Kinase; domain 1 21 126 - -
Amo20g3272 394 MobiDBLite consensus disorder prediction 366 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3272 Amo-Chr20 139901618 139906208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3272 1 338 Glycoside Hydrolase AT3G07070 51.567 1.19e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo20g3272 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3272 - - gmx:100499647 734.176