Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3237 ATGGATGTGGATAATAATCATAATAGTGTTGGTGCCATGGCTAGTAGTAGGAAGAAGAAGAAGAAGAAGAAGAATGGGTCAATAAGTTCAATTTTCATGCATGCAGATACCAAAGACTGGTTTTTCATGCTCTTTGGTTTGTTGGGGGCAATTGGAGATGGATTAACCACACCTTTGGTCTTGTTCATCACTAGCAAGATGATGAACAACCTTGGAAGTTTTTCTAATCTTGAAGGAGGTGGTGCTTTCACTCAGAACATAAACAAGAATGCAGTGGCTTTGTTATATCTGGCATGTGGGTCTTTTGTTGCTTGCTTCTTGGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCAACAAGAATGAGAGGCAGATATTTAAAGGCAGTACTAAGACAAGAAGTGGCATACTTTGATTTGCATGTTACAAGCACTTCAGAGGTCATCACCAGTGTCTCCAATGATAGCCTTGTAATTCAAGATTGTCTTAGTGAAAAGGTTCCAAATTTCTTGATGAATGCATCAATGTTTATTGGGAGCTACATAGTGGCATTTGCATTACTATGGAGACTAGCAATAGTGGGGTTCCCATTTGTGGTGTTGCTAGTGATCCCAGGCTTAATGTATGGAAGAACATTAATGGGGTTAGCAAGAAAAATAAGAGAAGAGTATAATCAAGCAGGGACAGTGGCAGAGCAAGCAATATCATCAATAAGAACAGTGTATTCTTTTGTGGGAGAGAACAAGACAATAGGTGCTTTCTCTGATGCTCTACAAGGTTCTGTTAGGTTGGGTTTGAAACAAGGGTTGGCTAAAGGGTTAGCAATTGGAAGCAATGGTGTTGTCTTTGCAATTTGGTCTTTTATGTCTTATTATGGTAGCAGGTTGGTTATGTACCATGCTGCTCAAGGTGGCACTGTTTTTGCTGTTGGTGCTGCTATTGCTCTCGGTGGATTGGCGTTAGGTGCCGGTCTATCCAATGTCAAGTACTTCTCAGAAGCAATCACTGCAGGAGAACGAATCATAGAGGTTATAAAACGAATTCCAAAAATTGATTCAGACAACATGGTAGGAGAGATTCTGGAAAACGTCTTAGGAGAAGTCGAATTGGATCATGTTGAATTCGCGTACCCGTCGAGACCGGACAACATGATACTATCCGACTTCTCCCTGAAGATTCCAGCCGGGAAAACTGTAGCCCTGGTGGGAGGGTCCGGGTCGGGGAAATCGACGGTGATATCACTGTTGCAAAGGTTCTATGACCCAATAGGAGGTGAGATAAGGGTTGATGGGGTGCCAATTAAGAAGATGCAATTAAAATGGCTAAGATCTCAAATGGGTTTGGTTAGTCAAGAGCCAGCACTATTTGCAACAAGCATAAAAGAGAATATTCTGTTTGGGAGAGAAGATGCATCTGAGCAAGAGATTGTGGAAGCTGCAAAAGCCTCCAATGCTCATAATTTCATCTCACAATTGCCACAGGGATATGATACCCAGGTTGGGGAGAGAGGAGTGCAAATGTCAGGAGGACAAAAACAAAGAATCGCCATCGCAAGAGCAATAATAAAAAAACCAAGAATCCTCCTTCTGGACGAAGCAACAAGCGCACTCGACTCCGAATCTGAGCGCGTTGTTCAAGAAGCGCTCGACAAAGCCGCCGTTGGCCGCACCACCGTCATCATTGCCCACCGCCTTTCCACTGTTCAGAATGCTGACCTCATTGCTGTCGTTCAGAATGGCAAGGTCGTGGAAATAGCGCCCCACCAAACCCTAATTCAAAATGACGCCGGTATTTACGCTTCCCTCGTTCACCTCCAAGCGTCAAAGAATAATAATGAACAAGACGACACTGTCGTTTTGCCTCCTCCTACTCATCCGTCATCCATTTCCAACAGCGATATTCATAACACAAGCAGTCGAAGGCTCTCGCTAGTTAGCCGATCTAGCTCAGCAAACTCCGTTGCCCGCGTGGCTTCTTGTGCCGGTGATGATGATGACGTAGAAAAAATAGTTGAAGATAACAACTTTGCTGTTCCTTCATTTCGCAGGTTGTTAGCTCTAAACCTTCCGGAGTGGAAGCAAGCATGTTTGGGATGTATGAGTGCAGTGCTATTTGGTGCAGTTCAACCGATTTATGCATTCTCKATGGGGTCAATGATATCCGTTTATTTTCTGACGGACCATGATGAGATTAAGAGGAAGACTATGATCTACGCACTTTGTTTTCTAGGGTTGGCTGTGTTCTCTCTAATTGTGAATGTGTTGCAGCATTATAACTTTGCTTACATGGGTGAGTACTTGACAAAGAGGGTTAGGGAGAGGATGCCTTCAAAGATTCTCACTTTTGAAGTAGGCTGGTTTGACCAGGATGAGAATTCAACGGGTGCAGTTTGTTCTAGACTTGCCAAAGAAGCAAATGTGGTAAGGTCCTTAGTGGGAGACAGAATGGCCCTAGTGGTTCAAACAATCTCAGCGGTTCTAATAGCATGCACCATGGGCTTGATTATAGCATGGAGGCTCGCCCTTGTTATGATAGCCGTTCAACCAATCATCATAGCATGTTTCTACACAAGGCGTGTCCTTTTACAAAGCATGTCAAGCAAGGCCATCAAGGCCCAAAGCGAAACCAGCAAGATAGCCGCCGAGGCCGTCTCCAACCTCAGAACCATAACTGCATTCTCTTCCCAAGACCGGATGCTCAAGATGCTCGAGAAGGCCCAACAGGGTCCAAGACGTGAGAGCATCCGGCAATCTTGGTATGCCGGAATTGGGCTTGCTTGTGCCCAAAGCCTCACGTCTTGTACATGGGCCTTGGACTTTTGGTACGGTGGAAAACTTATAGCCCACGGATACATAACGTCCAAGGCGCTGTTTGAGACCTTCATGATCTTGGTGAGCACGGGTAGGGTTATTGCCGATGCTGGTAGCATGACTAGTGACCTTGCTAAAGGTTCAGATGCTGTGGCCTCTGTTTTTGCCATCTTAGACAGGTACACTAAGATTGAGCCCGATGACCCAGAAGGGTACAAGGCGGAAAAATTAACGGGCCAGATGGAACTAAAAGATGTCCATTTCGCATACCCAGCTAGGCCCAACGTGATGATATTCGAAGGGTTCTCAATGCAAATTGATGCAGGGAAATCAACAGCACTAGTGGGCCAAAGTGGTTCAGGCAAATCAACAATATTGGGTCTAATTGAGAGGTTCTATGAGCCAATGAAAGGACAAGTGATCATAGATGGTAGAGACATTAAATCATATAACCTAAGGTCACTAAGGAACCACATTGCACTAGTGAGCCAAGAGCCAACTCTATTTGGTGGCACCATAAAGGAGAACATTGCTTATGGAGCTTGTGAAAATGATGACAAAGTTGTGAGTGAAAGTGAGATTATAGAAGCAGCAAGGGTAGCAAATGCACATGAATTTATTGCAAGTTTGAAAGATGGGTATGACACATATTGTGGTGATAGAGGGGTTCAATTGTCAGGGGGTCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTCTGAAAAATCCAGAAGTTTTGCTATTGGATGAGGCAACAAGTGCACTTGATAGCCAATCAGAGAAGCTAGTGCAAGGTGCATTGGAGAGGGTTATGGTTGGAAGAACAAGTGTGGTTGTTGCTCATAGGTTAAGCACAATTCAGAATTGTGATGTGATTGCTGTTTTGGATAAAGGGAAGCTTGTGGAAAAAGGGACTCATTCATCTTTGTTGGGTAAAGGCCCAACTGGTGCTTATTACTCTCTTGTGAGTCTGCAACAAACAAGAGCAACCAACACTAATAATAGTAATAATAATGTTGGTGAAATTAGCTAG 3846 0.4402 MDVDNNHNSVGAMASSRKKKKKKKNGSISSIFMHADTKDWFFMLFGLLGAIGDGLTTPLVLFITSKMMNNLGSFSNLEGGGAFTQNINKNAVALLYLACGSFVACFLEGYCWTRTGERQATRMRGRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDCLSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVLLVIPGLMYGRTLMGLARKIREEYNQAGTVAEQAISSIRTVYSFVGENKTIGAFSDALQGSVRLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRLVMYHAAQGGTVFAVGAAIALGGLALGAGLSNVKYFSEAITAGERIIEVIKRIPKIDSDNMVGEILENVLGEVELDHVEFAYPSRPDNMILSDFSLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEIRVDGVPIKKMQLKWLRSQMGLVSQEPALFATSIKENILFGREDASEQEIVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTVIIAHRLSTVQNADLIAVVQNGKVVEIAPHQTLIQNDAGIYASLVHLQASKNNNEQDDTVVLPPPTHPSSISNSDIHNTSSRRLSLVSRSSSANSVARVASCAGDDDDVEKIVEDNNFAVPSFRRLLALNLPEWKQACLGCMSAVLFGAVQPIYAFSMGSMISVYFLTDHDEIKRKTMIYALCFLGLAVFSLIVNVLQHYNFAYMGEYLTKRVRERMPSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVLIACTMGLIIAWRLALVMIAVQPIIIACFYTRRVLLQSMSSKAIKAQSETSKIAAEAVSNLRTITAFSSQDRMLKMLEKAQQGPRRESIRQSWYAGIGLACAQSLTSCTWALDFWYGGKLIAHGYITSKALFETFMILVSTGRVIADAGSMTSDLAKGSDAVASVFAILDRYTKIEPDDPEGYKAEKLTGQMELKDVHFAYPARPNVMIFEGFSMQIDAGKSTALVGQSGSGKSTILGLIERFYEPMKGQVIIDGRDIKSYNLRSLRNHIALVSQEPTLFGGTIKENIAYGACENDDKVVSESEIIEAARVANAHEFIASLKDGYDTYCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQGALERVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKLVEKGTHSSLLGKGPTGAYYSLVSLQQTRATNTNNSNNNVGEIS* 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3237 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Amo20g3237 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1260 IPR003439 GO:0005524
Amo20g3237 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3237 1281 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Amo20g3237 1281 Pfam ABC transporter 1039 1191 IPR003439 GO:0005524
Amo20g3237 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1263 IPR027417 -
Amo20g3237 1281 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1002 - -
Amo20g3237 1281 SUPERFAMILY ABC transporter transmembrane region 680 1004 IPR036640 GO:0005524|GO:0016021
Amo20g3237 1281 MobiDBLite consensus disorder prediction 1 22 - -
Amo20g3237 1281 SMART AAA_5 396 568 IPR003593 -
Amo20g3237 1281 SMART AAA_5 1046 1243 IPR003593 -
Amo20g3237 1281 Gene3D - 359 608 IPR027417 -
Amo20g3237 1281 Pfam ABC transporter transmembrane region 43 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3237 1281 Pfam ABC transporter transmembrane region 697 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3237 1281 Gene3D ABC transporter type 1, transmembrane domain 646 1007 IPR036640 GO:0005524|GO:0016021
Amo20g3237 1281 Gene3D - 1009 1275 IPR027417 -
Amo20g3237 1281 CDD ABC_MTABC3_MDL1_MDL2 1020 1263 - -
Amo20g3237 1281 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524
Amo20g3237 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3237 1281 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 29 1269 - -
Amo20g3237 1281 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Amo20g3237 1281 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 342 - -
Amo20g3237 1281 Gene3D ABC transporter type 1, transmembrane domain 30 616 IPR036640 GO:0005524|GO:0016021
Amo20g3237 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 607 IPR027417 -
Amo20g3237 1281 Pfam ABC transporter 387 536 IPR003439 GO:0005524
Amo20g3237 1281 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 29 1269 IPR039421 -
Amo20g3237 1281 SUPERFAMILY ABC transporter transmembrane region 32 353 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3237 Amo-Chr20 139211593 139225802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3237 19 1279 Calmodulin-binding Proteins AT2G36910 44.410 0.0 1062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3237 K05658 - gmx:100807709 1981.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3237 20 139211593 139225802 Amo10g2629 10 89818561 89831534 hybridization