Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3236 ATGAAGAGGACAAGGGATGATGCTTACTCTGGCTCTCAATTCAAACGGCCCTTTGCTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGGGGCTGGAGGAGGAAGTGGAGGAGGTGGTGGTGGAGGAGCAACCCCGTCTCAGAAATTGACAACCAATGATGCCTTAACTTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAGAGAGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAGAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATATTTGGATTTAACACTTTCTTGCCTAAGGGATATGAGATAACACTTGATGAGGAAGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCGATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTCAAGGACCATACAGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATACTTCTCAAGCACCTTCTGCACAGCATGCTCCATATGGTCGAAGTTCATTGCAGCGATTCAATGAGCGGAGTTCTACAGCACCCATGATGCGACAAGTGCATGTAGACAAGCAACGTTATCGACGAGACAGGATTCTTGGCTCTCATGATCGTGATCAGAGCGTTGATCGAGCTGATCTGGATGATGACAAAATAAACATGCACAAGGAGCAGAGGAAACGTGAGAATAGGGATAGAAGAGTCCGTGATCATGATGAGAGAGAACAAGATCTTGATAATGGCAGGGATTTGAACTTGCAACGCTTTCAAGACAAAAAGAAATCTGTCAAGAAGGCGGAAGGGTTTGCCATGGCTTCTGACTTTCCTTCATATGATGACAAAGATGCGTTAAAGACCATGTATGGTCAAGCATTCAGCTTCTGCGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGGATAATAAAAAGGAACGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAACACTCTGATCTATTGCATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGACGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCTCTGTCTACCGATGGTCATATATCAAGATCATCAAAGTTGGAGGACAAAGATAAAGAGCACAAGCGTGAGATGGATGGACCTAAAGAGAAAGAAAGATACAGTAAATACTCGGGAAAATCCATTCAAGAACTCGATCTTAGTGACTGCAAACGTTGTACTCCAAGCTATAGGCTGCTGCCTGCAGATTATCCAATTCCTGTGGCTAGTCAGAGATCTGAACTTGGAGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGGAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAGATGCGAAGATGACAGATTTGAGATGGACATGCTATTAGAGTCAGTGAGTTCTGCTGCGAAACGTGTAGAGGAGTTGTCTAATAGCATTAATGAAAATAAGATGGAGAACCTGGGCCGTATTGAAGATCAATTTACTGCTTTAAATTTAAGGTGCATTGAACGTTTGTATGGTGACCATGGTCTCGATGTGATAGACATTTTGCGTAAAAATCCAACTCATGCTCTGCCTGTAATATTGACTCGACTTAAGCAGAAACAAGAGGAGTGGACTAAGTGTCGTGCAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAGAACCACTACAAGTCACTCGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGCACACGAAATATTTGGTGACCGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGATATTCTTCAGTCCATTGCTGCTGGAAGTAAACAGCCTCTAACTCCACATCTTGAGTTTGAATATCCTGATGCTGCAATTCATGAAGACTTGTATAAACTTATTCGGTATTCATGTGAGGAGATTTACTCTAGTAGGGAGTTGATGAATAAAACTATGAGGCTCTGGTGTACCTTTTTGGAACCGATGCTTGGTGTTCCTTCCCGATCTCATGGGACAGAAAAGGTGGAAGAGAGGAAAGCAGGGCCTAATGTTGGCAATGCAGGCAATGGAAGTCCTCATGGAGACTCCATTTCAATTAATTCAAGGTTACCAAAATCTGACAAGAATGAAGCAGATGGTAGAGTACCTGATGTAAAGAATGTTCACCGGACTAGTGCTGCAGCTAATGATAAAGAAAATGGATCTGTTGGTCGTGAAAATGTCTGTAGAGATGAACTCCCACTGGATAAAGGGCAGACAAATATAGAGTGCAMCRATAAAGTCTCTGGGATTAATAAACAATTTTCTGCTGATGAACAAGGAGCTAAAAACAATGCATTAATTTCAGTTAGAGGAGAAAAATTAGAAGATAATCCTAGCAGGAACAACGAAGAATTGACTCCAGGCACTGTCACTACTCCTTCTCGACCTACTGACGCTGACGAATCCGTACCTAAACCTCAGGAAGTAAATGCTACTTTGGTAGAGGGGTCTGATGTTACAGCTCCAGTTACAGTGGCCGATGGGGTACCAACTCAGAGCAGTAAAGTTAGAAGCCATGAAGAATCTGCTGGGCCTTGTAAAACTGAAAAGGAAGAGGGCGAGTTATCACCAAATGGTGATTCGGAGGAGGATAACTTTGTTGCTTATGGAGATTCAAATGTGCAGTCAATGTCTAAGTCAAAGCACACTATTGAGAGAAGAAAATATCAGTCCAGAATTGGAGAGGATGAGTCCTGCCCAGAGGCTGGAGCAGGCGATAATGATGCAGATGCAGATGATGAGGACAGTGAAAATGTGTCTGAAGCTGGTGAAGATGTCTCGGGCAGTGAATCTGCTGGTGATGAATGCTTCCGAGAGGACCACGAGGATGAGGAAGATATAGAGCATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCAGAGGGTACATGTGATGCACAATCTGCTGGAGGAGATGGTTCATCTCAGCCACATTCAGAAAGGTTTCTTTCGTCTGTGAAACCTCTGACAAAGCATGTTTCAGCAGTGTCATATGTTGAAGACATGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCACTTTTTAGGCTTCATCAACTTCTTTATGAAAGGATCTTGTCTGCAAAAACCAATGCCACGAATTCAGAAATGAAATGGAAAGCCAAGGATGCCAGCTCCCCAGATCCTTATTTGAAATTTATGGATGCATTGTACAGCCTTCTTGATGGATCTTTTGAGAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGCAACCAGTCATATGTGTTATTCACATTGGACAAATTAATATATAAACTAGTTAGACATCTTCAAAATGTTGCAACAGATGATATGGCCAATAAGCTTCTCCAATTGTATGAGTACGAAAAGTCTCGGAAACCTGGGAAACTAAACGATTCAGTATATCATGCAAATGCACATGTTATCCTTAATGAGGACAATATATATCGATTGCAATGTTCCTCACCACCCTCTCGGCTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTTTCTATTGATCCAAATTTTTCTTTTTACCTTCACAATGATTTTCTCTCCGTCCTTCCTTCTAAAAAGGAACCCCATGGCATTTTACTTCAAAGAAACAAACGCAAATTTGGAGATATTGATGAGCTTTCTGGAATAACTTCTGCTATGGAAGGTGTCAAACTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATCTCCTATGTTCTCGACACACAAGATTTCTTTTTCCGGCCGAAAAGGAGAAGGCAAGCGTCACCGGAAACCAGATCTTGTCGRCACCGGAGGGACAGAGAGGAAAGATACCGCAGGTTGATGGCGACCGTGTCTCAATGA 4137 0.416 MKRTRDDAYSGSQFKRPFASSRGDSYGQTQGAGGGSGGGGGGGATPSQKLTTNDALTYLKEVKDMFQDQREKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEEEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHTDLLDEFTRFLPDTSQAPSAQHAPYGRSSLQRFNERSSTAPMMRQVHVDKQRYRRDRILGSHDRDQSVDRADLDDDKINMHKEQRKRENRDRRVRDHDEREQDLDNGRDLNLQRFQDKKKSVKKAEGFAMASDFPSYDDKDALKTMYGQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLLHEFNDFLERCENIDGFLAGVMSKKSLSTDGHISRSSKLEDKDKEHKREMDGPKEKERYSKYSGKSIQELDLSDCKRCTPSYRLLPADYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFEMDMLLESVSSAAKRVEELSNSINENKMENLGRIEDQFTALNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWTKCRADFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLHTKYLVTEIKEIKEKQQKEDDILQSIAAGSKQPLTPHLEFEYPDAAIHEDLYKLIRYSCEEIYSSRELMNKTMRLWCTFLEPMLGVPSRSHGTEKVEERKAGPNVGNAGNGSPHGDSISINSRLPKSDKNEADGRVPDVKNVHRTSAAANDKENGSVGRENVCRDELPLDKGQTNIECXXKVSGINKQFSADEQGAKNNALISVRGEKLEDNPSRNNEELTPGTVTTPSRPTDADESVPKPQEVNATLVEGSDVTAPVTVADGVPTQSSKVRSHEESAGPCKTEKEEGELSPNGDSEEDNFVAYGDSNVQSMSKSKHTIERRKYQSRIGEDESCPEAGAGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEDEEDIEHDDVDGKAESEGEAEGTCDAQSAGGDGSSQPHSERFLSSVKPLTKHVSAVSYVEDMKDSRVFYGNDDFYALFRLHQLLYERILSAKTNATNSEMKWKAKDASSPDPYLKFMDALYSLLDGSFENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRHLQNVATDDMANKLLQLYEYEKSRKPGKLNDSVYHANAHVILNEDNIYRLQCSSPPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNDFLSVLPSKKEPHGILLQRNKRKFGDIDELSGITSAMEGVKLINGLECKIACSSSKISYVLDTQDFFFRPKRRRQASPETRSCRHRRDREERYRRLMATVSQ* 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3236 1378 ProSiteProfiles PAH domain profile. 48 118 IPR003822 GO:0006355
Amo20g3236 1378 SUPERFAMILY PAH2 domain 46 117 IPR036600 GO:0006355
Amo20g3236 1378 MobiDBLite consensus disorder prediction 777 791 - -
Amo20g3236 1378 ProSiteProfiles PAH domain profile. 132 202 IPR003822 GO:0006355
Amo20g3236 1378 MobiDBLite consensus disorder prediction 14 32 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 761 776 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 738 815 - -
Amo20g3236 1378 Pfam Paired amphipathic helix repeat 353 397 IPR003822 GO:0006355
Amo20g3236 1378 Pfam Paired amphipathic helix repeat 155 199 IPR003822 GO:0006355
Amo20g3236 1378 Pfam Paired amphipathic helix repeat 71 115 IPR003822 GO:0006355
Amo20g3236 1378 PANTHER SIN3B-RELATED 1 1366 IPR039774 GO:0003714
Amo20g3236 1378 MobiDBLite consensus disorder prediction 421 449 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 202 304 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 1056 1071 - -
Amo20g3236 1378 Gene3D Paired amphipathic helix 54 116 IPR036600 GO:0006355
Amo20g3236 1378 MobiDBLite consensus disorder prediction 926 941 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 966 981 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 423 449 - -
Amo20g3236 1378 Pfam Sin3 family co-repressor 465 559 IPR013194 -
Amo20g3236 1378 SMART hdac_interact2seq4b 463 563 IPR013194 -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 987 1007 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 235 304 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 1023 1038 - -
Amo20g3236 1378 Gene3D Paired amphipathic helix 131 203 IPR036600 GO:0006355
Amo20g3236 1378 SUPERFAMILY PAH2 domain 333 400 IPR036600 GO:0006355
Amo20g3236 1378 Gene3D Paired amphipathic helix 328 402 IPR036600 GO:0006355
Amo20g3236 1378 SUPERFAMILY PAH2 domain 129 201 IPR036600 GO:0006355
Amo20g3236 1378 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1366 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 1 49 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 867 884 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 202 229 - -
Amo20g3236 1378 MobiDBLite consensus disorder prediction 849 1072 - -
Amo20g3236 1378 Pfam C-terminal domain of Sin3a protein 1096 1343 IPR031693 -
Amo20g3236 1378 ProSiteProfiles PAH domain profile. 331 400 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3236 Amo-Chr20 139162286 139177268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3236 22 151 WRKY Transcription Factor Family AT4G12020 44.138 5.81e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo20g3236 Sin3a_C 1.5e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3236 K11644 - gmx:100807181 2157.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3236 20 139162286 139177268 Amo10g2628 10 89766439 89775188 hybridization