Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3227 ATGGATCCACCACTTTGTGCCAATGGTTGCGGCTTCTATGGTTCTGCTGCCAACAACAATCTTTGTTCAAAATTTACCAAAGACTTTGCTGCAACCATTGATGATATTTCTACCAACAACAACAATGAAACGAAGAAAAGGTGCAAGAAGTGCAATAAAAAGGTTGGATTAATAGGGTTTGAGTGTCGATGTGGAGATTTGTTTTGTGGAAAGCATAGGTATCCAGAAGTTCATGAATGTGAATTCAATTTTAAGGATATTGGTCGCAACATTTTGGCAAAACAGAACCCTCTTTGCATTCGTGATAACAATAATAACAACCATGCATTAACTGATGCGTTTGAAAGATTTACCAAAGACTTTCGGGCAATCGTTGACGATATTTCTACCAACAACAACAACAATGCAACGAAGAAAAGGTGCAAGAGGTGCAATAAAAAAGTTGGGTTAATAGGGTTTGAGTGTCGATGTGGAGATTTGTTTTGTGGAAGGCATAGGTATCCAGAAGTTCATGAATGTGAATTCAATTTTAAGGATATTGGTCGCAACATTTTGACAAAACAGAACCCTCTTTGTATTCGTGATAAATTAGATGAAAGAATTTAG 606 0.368 MDPPLCANGCGFYGSAANNNLCSKFTKDFAATIDDISTNNNNETKKRCKKCNKKVGLIGFECRCGDLFCGKHRYPEVHECEFNFKDIGRNILAKQNPLCIRDNNNNNHALTDAFERFTKDFRAIVDDISTNNNNNATKKRCKRCNKKVGLIGFECRCGDLFCGRHRYPEVHECEFNFKDIGRNILTKQNPLCIRDKLDERI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3227 201 Gene3D - 23 102 IPR035896 -
Amo20g3227 201 Gene3D - 122 194 IPR035896 -
Amo20g3227 201 Pfam A20-like zinc finger 5 24 IPR002653 GO:0003677|GO:0008270
Amo20g3227 201 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Amo20g3227 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 30 - -
Amo20g3227 201 SMART AN1_Zf_4 48 85 IPR000058 GO:0008270
Amo20g3227 201 SMART AN1_Zf_4 141 178 IPR000058 GO:0008270
Amo20g3227 201 ProSiteProfiles Zinc finger AN1-type profile. 42 88 IPR000058 GO:0008270
Amo20g3227 201 PANTHER AN1-TYPE ZINC FINGER PROTEIN 38 104 - -
Amo20g3227 201 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 31 - -
Amo20g3227 201 PANTHER AN1-TYPE ZINC FINGER PROTEIN 124 201 - -
Amo20g3227 201 SMART A20_3 3 26 IPR002653 GO:0003677|GO:0008270
Amo20g3227 201 Pfam AN1-like Zinc finger 48 83 IPR000058 GO:0008270
Amo20g3227 201 Pfam AN1-like Zinc finger 141 176 IPR000058 GO:0008270
Amo20g3227 201 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 38 104 - -
Amo20g3227 201 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 3 31 - -
Amo20g3227 201 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 124 201 - -
Amo20g3227 201 SUPERFAMILY AN1-like Zinc finger 131 193 IPR035896 -
Amo20g3227 201 SUPERFAMILY AN1-like Zinc finger 36 101 IPR035896 -
Amo20g3227 201 ProSiteProfiles Zinc finger AN1-type profile. 135 181 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3227 Amo-Chr20 138744743 138756924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3227 5 98 C2H2 Transcription Factor Family AT3G52800 34.014 5.10e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3227 - - adu:110276973 219.935