Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3214 ATGGAATGCAGGAAACAAAATGGTCAAATTCTAATACCTATTTTCCATAAGGTAGACCCATCATGGGTGCGCCACGAAAAGGAAAGTTATCACCACGCCCTTGCTAATCATGAGGTGAGGTTTGCAGACAGGGTGCAAATTTGGAGAGAAGCTCTCAAGGAAGCTGCCAATTTGTCTGGATTTCATTCACCGTCATCAAGCTTCCGGAATGATGCTGATCTTGTTGATGAAATTGTCAAACGTGTCTTACAAAGGTTAAACCAATCACCCCAAGGTGATTTGCAGGGTCTTGTTGGAATTCATGGACCAATTGAAAAGCTAATTTCGTTGTGCACGGAATCTAAAGCTGTTATTATTGGCCTTTGGGGCATGGGCAGTGTTGGTAAGACAACTCTTGCGAATGCAGTTTTCAATAGATTGTGTGATGGATTTGAAGGATTTTGCTTTTTGAACAATGTAAGAGAAAGAGCTGAGAAATATGGTATAGATCATTTGAAGACAGAACTTCTTTCCAAACTGCTAAAGGAAAAAGATGCAAGTCCCTTTGTCACGACTGGCGGGATAACTAATTTTTCCAAGAAAAGACTTAGTCGAACAAAGGTTCTTGTTGTTCTTGATGATGTCAATGATTCAGACCAAATGGAAGATTTATGTGGAGGACATGCATGGTTTGGGGAAAGTAGCAGAATCATAATGACAACAAGAGATAAGCATGTCCTTGTTAAGGCGGGCGCTAATCATATTCATCAAGTTAAGACATTGAATTCTGATGATTCCCTTAAGCTTTTCAGCCTGAATGCCTTCAAGCAAAACTGCATTATAAAAGCAGAACAAGTTGAGTTGTCCAAGAGAGTGCTTAACTATTGCAAAGGCCTTCCCTTAGCAATAAAAATCTTGGGTTCCTTCCTTAAAAGAAAAACTCAACAAGAGTGGGAAAGTGAACTGGCCAAACTTGAAAAGATGCCTGATGAAAAAATCCAAAGTATATTGCGATTGAGTTATAATGAATTAGATCGTAATGATTGGAATATATTTTTGGAACTTGCATGTTTTTTTGATACAAATACAGAAGACGAGCAGCTAAAATCTCTTCTTGATCGCTGTGGATACACAACTACTATCGGGTTGACAAATCTTTGTAATAATGCTCTTATTTCCATTTCAAACAATTGTGTGTCAATGCATGACTTAGTTCGAGAAATGGGCCGTGAAATTGTTCGTGAAGAATGTCTAAATGATCCAGGAAAACGCAGTAGACTATGGGATTCTTGTGATACCTATGAAGTACTGAAATATAATAAGAGAACTCAAGCTATTCAAAGTATCACATTAAACATGTCTGAAATTGATATGATAAGATTGCACCCTGAGACATTTGAAAGAATGCCAGAACTGAAGCTTGTTAGATTTCATGCAGCCAATTCCAAAAACAAGTTGTGTGCTCCAGAAGGTATTACATCCCTGCCAGAGAAGTTAAGGTATTTTCATTGGGATGAGTTTCCTTTGAAATCTTTGCCATCTTCTTTTGGTGCTGAGAGATTTGTTGAAATCATAATGCCCAATAGTGGATTGCAAATGCTTTGGGAAGGTGAACAGAATCTTGTAAATATAAGGAAAGTGGATCTTGATGGTTCATCAAGCCTAATGGAGCTCCCAGATTTATCAAAAGCTTCAAATCTTAGAGAAGTGAGTATCCCTGGTTGCAAGAGTCTGTGTCAAGTTCCTCCATCTGCTGTATGTTCCCAGAAGCTGAAATACCTGAAAGTGAGCAACTGTGAGAGCCTTGAATCCATAGCAGAGCTTCCAACATTGGTTATGTACGTAATTGCTCGCAACTGCTGCTCGCTACACACTGTATCTGTATCTGCTTTGGATTCTGTGGCCAAAGAACCGATCCAGCAGCAGCAATTTGAGGATATAACCTTCAATTTCACCAGCCGCAATTTTTTTTTCCCCAACATTATTTTTTGTGTTGTAGAACCCTTTTTCTTTTCTTGCCCCTTAGTGGTGAATTTCAAATTCTGTTAG 2028 0.3881 MECRKQNGQILIPIFHKVDPSWVRHEKESYHHALANHEVRFADRVQIWREALKEAANLSGFHSPSSSFRNDADLVDEIVKRVLQRLNQSPQGDLQGLVGIHGPIEKLISLCTESKAVIIGLWGMGSVGKTTLANAVFNRLCDGFEGFCFLNNVRERAEKYGIDHLKTELLSKLLKEKDASPFVTTGGITNFSKKRLSRTKVLVVLDDVNDSDQMEDLCGGHAWFGESSRIIMTTRDKHVLVKAGANHIHQVKTLNSDDSLKLFSLNAFKQNCIIKAEQVELSKRVLNYCKGLPLAIKILGSFLKRKTQQEWESELAKLEKMPDEKIQSILRLSYNELDRNDWNIFLELACFFDTNTEDEQLKSLLDRCGYTTTIGLTNLCNNALISISNNCVSMHDLVREMGREIVREECLNDPGKRSRLWDSCDTYEVLKYNKRTQAIQSITLNMSEIDMIRLHPETFERMPELKLVRFHAANSKNKLCAPEGITSLPEKLRYFHWDEFPLKSLPSSFGAERFVEIIMPNSGLQMLWEGEQNLVNIRKVDLDGSSSLMELPDLSKASNLREVSIPGCKSLCQVPPSAVCSQKLKYLKVSNCESLESIAELPTLVMYVIARNCCSLHTVSVSALDSVAKEPIQQQQFEDITFNFTSRNFFFPNIIFCVVEPFFFSCPLVVNFKFC* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3214 675 Pfam NB-ARC domain 106 338 IPR002182 GO:0043531
Amo20g3214 675 Gene3D - 100 249 IPR027417 -
Amo20g3214 675 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 5 622 - -
Amo20g3214 675 Pfam Leucine Rich Repeat 515 532 IPR011713 -
Amo20g3214 675 Gene3D - 1 91 IPR035897 -
Amo20g3214 675 PRINTS Disease resistance protein signature 118 133 - -
Amo20g3214 675 PRINTS Disease resistance protein signature 195 209 - -
Amo20g3214 675 PRINTS Disease resistance protein signature 289 303 - -
Amo20g3214 675 PRINTS Disease resistance protein signature 532 548 - -
Amo20g3214 675 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 622 IPR044974 GO:0006952
Amo20g3214 675 Gene3D - 253 338 IPR042197 -
Amo20g3214 675 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 61 IPR035897 -
Amo20g3214 675 SUPERFAMILY "Winged helix" DNA-binding domain 325 431 IPR036390 -
Amo20g3214 675 ProSiteProfiles TIR domain profile. 1 86 IPR000157 GO:0007165
Amo20g3214 675 Pfam TIR domain 1 99 IPR000157 GO:0007165
Amo20g3214 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 346 IPR027417 -
Amo20g3214 675 Gene3D Ribonuclease Inhibitor 427 627 IPR032675 -
Amo20g3214 675 SUPERFAMILY L domain-like 410 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3214 Amo-Chr20 138534432 138537897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3214 1 604 WRKY Transcription Factor Family AT4G12020 31.341 2.45e-83 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3214 - - aip:107624503 1345.87