Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3204 ATGAGTGCCCTTCATATCATGGCTTCGTCTTCATCTCAGATAAAATATGATGTCTTCATCAGTTTTAGAGGTTTAAACACCCGTCGCGGTTTTCTAAGCCATTTGCTTAAGGCATTAAGGGAGAAACAAATTGATACATATGTGGATGACAGGCTCAAAGAAGGAGATGAGTTATTGCCTGCCTTTTTTACAGCAATTGAGAAATCACAAATTGTATTGGTTATATTTTCCAGCGATTATGCTTCTTCAAAATGGTGTTTGGAAGAGCTTGTCAAAATAACAGAATGCATGACAAAAAATTGGCAAATTGTAATACCTATCTTCTACAATATAGATCCATCAGATGTACGACGTCAAAAGGGGTGCTACCAAAATGCATTTGTTCATCATGAAAAATCTTTCAAAGACAACATCATGACTGTAGAAAAATGGAAACATTCCTTGAAAAGAGTTGCCAATTTATCAGGATTTCATTCCATAAATTTTGGGACTGAAGTTGAACTTATTGAAAAAGTTGTACAACGTGTGTTAACAAGGTTGAATTACATGCCCCGAATTGAGTTCAAAGGTCTTATTGGAATCGATAAACCAATTGAAGAGCTTCAATCAATGATGTCATGCACTGCATCAAAAGATGTTCATATTATAGGAATTTGGGGTATGGGTGGTATTGGTAAAACCACTATAGCCAGTGCATTATTTAATATATTATGCTCTGAATTTGAAGGTTGCTGTTTTGTTCCAAATGTCAGAGAACAATCAGAGAAGAATGGGATAATCCAATTAAGAGATAAACTTCTTTCCATATTGTTAGAGGAAAAAGATCTAAACATTGGTGCTAATGGAGTACCAAGTCATGTTTTGAGGAGACTTGGTCGCAAGAAGATTCTTGTTGTTCTTGATGATGTTAATAATCCAGATCACGTTCAAAACTTAGTTGGAGGACATAAATGGTTGGGTCAAGGTAGCAGAATCTTCATCACAACTAGAGATAAGCATGTGATTTGTAAAGAAGCCGATGATATTTATGAAATTGGGGCATTGGAACACCATGAAGCTTTGCAACTTTTAAATTTGCATGCCTTCAATGGAAGGAGCCTACAAATGAATCATCATAATCTTATAACAAAAGTAGTTGATTATGCCAAGGGAATCCCCTTAGCCTTAAAGGTGTTAGGAACTTTTCTTTATGGAAAAAGTGCTAAAGAATGGGAAAGTCAATTGCAAAAACTTGAGAAAATGTCATTCAACGAAATCCAAAATGTTTTGAGATTAAGTTACGAAGGACTAGATCGAGAAGAAAGCAACATATTTTTATATATTGCTTGTTTTTTCAAAGGAGATGATAACATTAAAATTTTACTGGATGCATGTGGTTACTCKACAGCTATTGCTTTGAAAACTCTTCATGACAGAGCTCTTATAATTGTTTCAAAAGATGGAAAGCACGTAACCATGCACGATTTGATTCYAGAAATGGGTCGAGAAATTGTTCGTCGGCAAAACATTGAAAAGTTTGGGGAACGAAGTCATTTATGGGATCCTATAGACATAACTCAAGTACTAAAGCAGAACCAGGGGACTGATCGTATTGAAAGCATAACCTTCAACATGTCAAGTGCTCCTGATCTGAGGTTAAATCGTCATTCCCTTGCTAAAATGAAAAATCTTAACTTTCTGAGATTCTATTCATATGATACATATGGGGTGCACCTTCCAGAAGGCCTTGAAAAATTGCCAGACAAACTAAAACTTTTTCACTGGGATGATTACCCTTTGGAATCCTTGCCCACCAAATTTAATGCAGAGAATCTTGTTGAACTTGATATGCAAGGAAGTTACGTCAAAAAACTTTGGAATGACYTACAGAATTTGGCTAATCTAAGACGCATTGATCTTGATGGATCCAAGCAATTGATAGAGCTTCCAGACCTCTCCAAAGCCTCAAATCTTGAAACATTATCACTCTGTGACTGTGAAAATTTGCGCTCTGTTCATCCATTTATTTTCTTCCTCCAAAAACTAATTCATGTGGACCTAGAGCGTTGTATAAGGTTGAAGAAACTCCCAGGTGAGTTATGCAGCAGCAGTAAGGTTGAACACTTGAACCTATCAGGATGCAAGAGTCTAAAGCATCTGCCAGATAGCACATCCAAATTAGAATTTCTTAAAGAGCTTTACCTTGAAGGATGCCAGCAACTTGACACATCAAACCTACACATTTTATTTAGTGGGTTATCATCATTAGAAAGGCTCAATTTGGGTGGGTGCCATAACTTGGATAAACTACCAGACAATGTCAACAACTTATCATTGTTATGTTGGTTATCAYTAAAGGGAACTAATGTGAAGAGCTTGCCAGAYAGCATCAAACATCTTCGAAAGTTGAGATKTCTCTACTTGGGGAGTTGTAGGAGGCTTCAATCATTGCCTGAGCTTCCACCTTCTATACAATACTTGGAAGTCAGTGATTGCACATCCTTGAAAACAGTGTTCACTCCAACACCTAAAATACTCAAACAACACGTCAAATTGTTCAAGAAACAAATAAGTGAAGATGACTTCAGGAGGTATGAAAGTGGGCCGGATTATTTTAACATATATTTTTCATTTGAGAATTGCCCAAGTTTGGATAGGAATGCACTTCGTGTTCTTTTAATATATCTTGGACACTACAATAAGGAGAAGAGAGCAGTTATGGAAAAGCAAATTGAGAAAAGGAGAGCATCCTCATAA 2736 0.364 MSALHIMASSSSQIKYDVFISFRGLNTRRGFLSHLLKALREKQIDTYVDDRLKEGDELLPAFFTAIEKSQIVLVIFSSDYASSKWCLEELVKITECMTKNWQIVIPIFYNIDPSDVRRQKGCYQNAFVHHEKSFKDNIMTVEKWKHSLKRVANLSGFHSINFGTEVELIEKVVQRVLTRLNYMPRIEFKGLIGIDKPIEELQSMMSCTASKDVHIIGIWGMGGIGKTTIASALFNILCSEFEGCCFVPNVREQSEKNGIIQLRDKLLSILLEEKDLNIGANGVPSHVLRRLGRKKILVVLDDVNNPDHVQNLVGGHKWLGQGSRIFITTRDKHVICKEADDIYEIGALEHHEALQLLNLHAFNGRSLQMNHHNLITKVVDYAKGIPLALKVLGTFLYGKSAKEWESQLQKLEKMSFNEIQNVLRLSYEGLDREESNIFLYIACFFKGDDNIKILLDACGYSTAIALKTLHDRALIIVSKDGKHVTMHDLIXEMGREIVRRQNIEKFGERSHLWDPIDITQVLKQNQGTDRIESITFNMSSAPDLRLNRHSLAKMKNLNFLRFYSYDTYGVHLPEGLEKLPDKLKLFHWDDYPLESLPTKFNAENLVELDMQGSYVKKLWNDLQNLANLRRIDLDGSKQLIELPDLSKASNLETLSLCDCENLRSVHPFIFFLQKLIHVDLERCIRLKKLPGELCSSSKVEHLNLSGCKSLKHLPDSTSKLEFLKELYLEGCQQLDTSNLHILFSGLSSLERLNLGGCHNLDKLPDNVNNLSLLCWLSLKGTNVKSLPDSIKHLRKLRXLYLGSCRRLQSLPELPPSIQYLEVSDCTSLKTVFTPTPKILKQHVKLFKKQISEDDFRRYESGPDYFNIYFSFENCPSLDRNALRVLLIYLGHYNKEKRAVMEKQIEKRRASS* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3204 911 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Amo20g3204 911 Gene3D Ribonuclease Inhibitor 517 717 IPR032675 -
Amo20g3204 911 PRINTS Disease resistance protein signature 623 639 - -
Amo20g3204 911 PRINTS Disease resistance protein signature 382 396 - -
Amo20g3204 911 PRINTS Disease resistance protein signature 290 304 - -
Amo20g3204 911 PRINTS Disease resistance protein signature 215 230 - -
Amo20g3204 911 Gene3D Ribonuclease Inhibitor 718 859 IPR032675 -
Amo20g3204 911 Gene3D - 347 431 IPR042197 -
Amo20g3204 911 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
Amo20g3204 911 Gene3D - 180 342 IPR027417 -
Amo20g3204 911 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 693 812 IPR044974 GO:0006952
Amo20g3204 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 441 IPR027417 -
Amo20g3204 911 Pfam NB-ARC domain 196 425 IPR002182 GO:0043531
Amo20g3204 911 Gene3D - 8 179 IPR035897 -
Amo20g3204 911 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 693 812 - -
Amo20g3204 911 SMART till_3 15 154 IPR000157 GO:0007165
Amo20g3204 911 SUPERFAMILY L domain-like 486 830 - -
Amo20g3204 911 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 695 IPR044974 GO:0006952
Amo20g3204 911 Pfam TIR domain 15 186 IPR000157 GO:0007165
Amo20g3204 911 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3204 Amo-Chr20 138133389 138138935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3204 11 806 WRKY Transcription Factor Family AT4G12020 33.213 9.45e-113 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3204 - - ahf:112730190 1630.54