Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3193 ATGGCCATGGCTGCTCTCCGTCGTGAAGGGAGGCGATTCGCCACCCCACTCCTCTCTTCTCCTATCCGCTCCTCTCTCATCTCTCACTCTCAAGAACAAGCTCCCAATGGAGTGCGCTCTATTTCGACTCAAGTTGTGAGAAACAGGATGAAGAGTGTTAAGAATATCCAGAAGATCACAAAGGCAATGAAGATGGTTGCAGCCTCTAAGCTTAGAGCTATTCAAACCAGAGCTGAAAACTCCCGTGGCCTCTGGCAACCATTCACTGCCCTTCTGGGTGACTCTCCCAGTGTTAATGTCAAGAAGAGTGTTATTGTTACCGTTTCTTCAGACAAAGGTCTTTGTGGTGGTATCAATTCCACATCTGTCAAGATAAGCAGGATTTTGCACAAATTGAGCTCTGGGCCTGAGAAAGAGACAAAGTATGTCATATTGGGTGAGAAGGCTAAGGCTCAATTGATACGTGATTCCAAGGATGACATTAGTCTCAGCATAACTGAGCTGCAGAAGAATCCCCTGAACTATTCTCAGGTTTCAGTCTTGGCAGATGACATCCTAAAGAATGTGGAGTTTGATGCCTTAAGGATTGTGTTCAACAAGTTCCATTCAGTTGTCCAATTTATGCCAACTGTGTCAACTGTGCTCTCTCCTGAGATTGTGGAGAGAGAGGCTGAAGCTGGGGGAAAGCTTGGGGAGCTAGACTCTTATGAAATTGAAGGTGCCGAGACAAAAGGAGAAGTTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTATATTGTTCAATGGGGTGTTGGAGAATGCTTGCAGTGAACAAGGAGCAAGAATGTCTGCCATGGACAGCTCTAGCAGGAACGCTGGAGATATGCTCGACCGACTCACTCTCACCTACAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATATCTGGAGCTTCAGCACTGGAAGGTTAA 966 0.4586 MAMAALRREGRRFATPLLSSPIRSSLISHSQEQAPNGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDSPSVNVKKSVIVTVSSDKGLCGGINSTSVKISRILHKLSSGPEKETKYVILGEKAKAQLIRDSKDDISLSITELQKNPLNYSQVSVLADDILKNVEFDALRIVFNKFHSVVQFMPTVSTVLSPEIVEREAEAGGKLGELDSYEIEGAETKGEVLQNLAEFQFSCILFNGVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3193 321 CDD F1-ATPase_gamma 42 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 PANTHER BNAA05G10580D PROTEIN 1 320 - -
Amo20g3193 321 Gene3D ATP synthase, gamma subunit, helix hairpin domain 46 316 - -
Amo20g3193 321 PANTHER ATP SYNTHASE GAMMA CHAIN 1 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 319 IPR035968 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 PIRSF ATP_synthase_gamma 10 319 - -
Amo20g3193 321 PRINTS ATP synthase gamma subunit signature 100 119 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 PRINTS ATP synthase gamma subunit signature 266 285 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 PRINTS ATP synthase gamma subunit signature 297 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 Gene3D - 66 278 - -
Amo20g3193 321 Pfam ATP synthase 44 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo20g3193 321 ProSitePatterns ATP synthase gamma subunit signature. 305 318 IPR023632 -
Amo20g3193 321 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 42 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3193 Amo-Chr20 137772461 137776438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3193 46 319 Primary Pumps ATPases AT1G15700 29.846 7.26e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3193 K02136 - rcu:8286653 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3193 20 137772461 137776438 Amo20g3193 20 137772461 137776438 ECH