Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3169 ATGAATCTAACGACGATGATGATGGAAACAAAGGAAGAAGGCATGATAATAGAAGAGAACAAGAAGAAGAGCAATGAAAATGACAAGTTTACCCTGAAAGGATCGGCGGCGGCGTCGTCATCAACAAGGCAATGGTCGGCGTTTCGGAATCCAAGAATCGTGAGGGTATCAAGGTCATTTGGGGGAAAAGACAGGCACAGCAAGGTTTGCACCATAAGAGGGCTTCGTGACCGTCGGATCAGGCTCTCAGTCCCCACCGCCATTCAATTGTACGACTTGCAAGACAAGTTGGGACTCTCTCAACCAAGCAAAGTCATCGATTGGCTTCTTGATGCTACAAAGCTTGATATCGATAAGCTTCCCCCTCTTCACTTCCCTCAGCCCTGCTTCCAACCGCCGCAAACCCTATTCCCTCATCTTCTCCATGACCCTTCCTCTTTCTGGAAACCCAGGTTCTGGGAATTGGACTCTTCCGCTTCCTCCTCTTCTTCTTCCAGGTTTCTCAAAGGGAAGGACTTGATGACCACCATGCCTTCCGATAATAATAACAATAAAGCCAAGTGGATCTTCAAATCAAACAATGCAGATCATGAGAATCAAGAATTTGGAGGCGGTTACACTACTCAGAGACTTTTCCCAATGGAGACTCAGACTACTACTAATAATAATCCTTTTCAGAGTTTGTTCTTCAGCAACAACAACAACAACAACAACTCTACTCCTGAGGCTTCTAATTTGGGAAGCCATGGATTGTTGTTTCCTTCTAGTTCTTGTTCTTCTTCTTCTACAAGTCTTTATCATCACCATCATCAAGTGGGAGATTACTATGGCAGTTATCCAATGATGAATAACGGGGGTTTGATGCAATTGAACCATTTATCTTCTTTGCAAGTAGGCCCATCTGGTTCCTCACAATTATTGTTTGGTCCTTTATCTTCTGCTACTGCTGTTGCTGCTGCTACACCGCAGATTTTCACACCTTATGCACCATTTGTAACAACCCCATCATCTCTTCTGGAAGGTAGTAGTCATAATAATAATAATAATAATAATGGCGGTGGTGATTCAATAAAACAACAGCATCAATTCATCAATAGTCACATTCATCAGTTCTTGAACTCATCGTCCTCATCCACATCATCATCATCATCAACAAGCCTTCTTCTCCATCACCATCATCATTCATTATTCAGTTCATCATCACCTGTCAGACCCTTCTTCCCTACACCCTTCAGTTCCAAGCTTCTAGATTCTTCCTCGTCAGATCGTAATGGAAGCCACCAACCAGATCATAATAATAAGGCTACTACTACTACTACTACTACTACTTCAGCTCGTTCTTGA 1344 0.4293 MNLTTMMMETKEEGMIIEENKKKSNENDKFTLKGSAAASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKLDIDKLPPLHFPQPCFQPPQTLFPHLLHDPSSFWKPRFWELDSSASSSSSSRFLKGKDLMTTMPSDNNNNKAKWIFKSNNADHENQEFGGGYTTQRLFPMETQTTTNNNPFQSLFFSNNNNNNNSTPEASNLGSHGLLFPSSSCSSSSTSLYHHHHQVGDYYGSYPMMNNGGLMQLNHLSSLQVGPSGSSQLLFGPLSSATAVAAATPQIFTPYAPFVTTPSSLLEGSSHNNNNNNNGGGDSIKQQHQFINSHIHQFLNSSSSSTSSSSSTSLLLHHHHHSLFSSSSPVRPFFPTPFSSKLLDSSSSDRNGSHQPDHNNKATTTTTTTTSARS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3169 447 MobiDBLite consensus disorder prediction 415 447 - -
Amo20g3169 447 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Amo20g3169 447 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 433 IPR005333 GO:0003700
Amo20g3169 447 MobiDBLite consensus disorder prediction 339 358 - -
Amo20g3169 447 PANTHER TRANSCRIPTION FACTOR TCP17 7 433 - -
Amo20g3169 447 Pfam TCP family transcription factor 62 181 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3169 Amo-Chr20 137094119 137096058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3169 12 214 TCP Transcription Factor Family AT5G60970 47.768 9.12e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo20g3169 TCP 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3169 - - aip:107621125 665.996