Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3159 ATGGAAAGCAGCAGCAACAACCAGTGGAGTGCTGAGGAAGCCATTGGTGGCAATGCCCAACCTCTTCAAGCACTCAGAGAAATCATCATCTTCCCGCGCCTATTTTCTCGACAAGCGCAGAGCCTTGGCCTCAAATGGCCACGGGGATTGCTGCTCTATGGCCCACCAGGCACTGGAAAGACGAGTTTGGTTCGAGCAGTGGTTCGGGAATGTGGGGCGCATTTGAAAATTATTAGTCCGCACATGGTGCACAGAGCACATGCCGGTGAAAGTGAGAAAATTCTCCGAGAGGCTTTTGCTGAGGCAGCATCTCAAGTAGCTTTGGGCAAGTCATCAGTTATCTTTATAGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCTAAAAGGGAGCAAGATGTCCGAGTTGCCTCACAACTCTTTACACTCATGGACTCTAATAAACCCACGTCTTCTACAGCAGGAGTCGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCCGCTCTAAGAAGATCCGGACGTTTTGATGCTGAAATTGAAGTTACTGTTCCAAATGAAGAAGATCGCTTTCAAATTCTTAAGCTGTATACAAAAAAGATTCCATTGGATCCCAATGTTAACATAAAAATCATTGCTGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCATTGTGTCGTGAAGCTACCATGTTTGCAATTAAAAGGTCAAATACAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGATTGGCAAAACGCAAGGTCCATTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTTGAAGTTCCCAAAGTGACTTGGGAAGACATTGGGGGATTAAAAGATTTGAAGAAAAAACTTCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGATGCATTTTCAAGATTGGGAATATCTCCCGTACGTGGAATTCTTCTCCATGGACCTCCAGGATGCTCAAAAACAACCCTTGCTAAAGCTGCTGCTCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTCTGCTCCGTAACACATTTCAGAGAGCCCGACTCGCGGCACCCAGTATAATATTCTTTGATGAGGCTGATGTTGTAGCTACAAAACGAGGTGATAGTTCAAGCAATAGTGCGACAGTTGGTGAGAGGCTTTTATCCACTTTGTTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTCTGGCAGCAACAAATCGCCCTTACGCGATTGACGCTGCACTCATGCGTCCAGGACGTTTTGATCTGGTTCTTTATGTGCCACCGCCTGATTTGGAGGCTCGATATGAGATACTTTGTGTCCATACGCGTAATATGAAAACMGCGAGTGACGTCAATCTCAGACKACTAGCAGAAGACACTGAACTCTTTACAGGAGCTGAACTGGAGGGGTTATGCAGGGAAGCTGGAATTGTGGCTCTAAGGGAAGACATATCCGCCACCGTTGTATGYGATCGTCATTTCCAGATAGTGAAAGATTCTGTAAACCCMGCAYTAACAAAAGCTGAAATTRATTCATACTCATCTTTTATGAAGACCTCATCTCAAGCTTTTCCTARACATTTTGATTCAGATATGGAATYAGATAGGAGCAAAAAGAATGGGTTCAATCCTATGTCTTTGGTTAAAATTAGTGTTGCCAGTTTTGTATTACTTGCTGCTGCTAAATACTATAACATAGGTGGAGACCAAATTGKACCTCATACACCAATGACCTGA 1809 0.4339 MESSSNNQWSAEEAIGGNAQPLQALREIIIFPRLFSRQAQSLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLKIISPHMVHRAHAGESEKILREAFAEAASQVALGKSSVIFIDEIDALCPRRDSKREQDVRVASQLFTLMDSNKPTSSTAGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKKIPLDPNVNIKIIAASCNGYVGADLEALCREATMFAIKRSNTNEDAINFSLTMEDWQNARSIVGPSITRGVTVEVPKVTWEDIGGLKDLKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVATKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRNMKTASDVNLRXLAEDTELFTGAELEGLCREAGIVALREDISATVVCDRHFQIVKDSVNPALTKAEIXSYSSFMKTSSQAFPXHFDSDMEXDRSKKNGFNPMSLVKISVASFVLLAAAKYYNIGGDQIXPHTPMT* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3159 602 CDD AAA 285 452 - -
Amo20g3159 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 525 IPR027417 -
Amo20g3159 602 Gene3D - 1 187 IPR027417 -
Amo20g3159 602 Gene3D - 269 453 IPR027417 -
Amo20g3159 602 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 19 523 - -
Amo20g3159 602 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 54 73 - -
Amo20g3159 602 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 400 419 - -
Amo20g3159 602 Pfam AAA+ lid domain 208 256 IPR041569 -
Amo20g3159 602 Pfam AAA+ lid domain 474 519 IPR041569 -
Amo20g3159 602 PANTHER AAA-FAMILY ATPASE 19 523 - -
Amo20g3159 602 CDD AAA 47 184 - -
Amo20g3159 602 Gene3D - 454 537 - -
Amo20g3159 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 266 IPR027417 -
Amo20g3159 602 Gene3D - 188 268 - -
Amo20g3159 602 ProSitePatterns AAA-protein family signature. 422 440 IPR003960 GO:0005524|GO:0016887
Amo20g3159 602 SMART AAA_5 46 188 IPR003593 -
Amo20g3159 602 SMART AAA_5 315 454 IPR003593 -
Amo20g3159 602 Pfam ATPase family associated with various cellular activities (AAA) 319 451 IPR003959 GO:0005524|GO:0016887
Amo20g3159 602 Pfam ATPase family associated with various cellular activities (AAA) 50 184 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3159 Amo-Chr20 136797460 136804285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3159 250 540 Calmodulin-binding Proteins AT3G56690 46.735 5.40e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3159 - - gmx:100814288 978.008