Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3158 ATGGAGTCTTGGAGTTATGTTTCTGAAGAGAAGGGTTATGTCTCAAACGATGCGATTTCCCCTCCCAACAGTGTTGGGAGGAACAGCAAAGGTTCCTTCTTGGGTTGGGAACTGAAAACCCCAGGTGGTTTTTCCATTGAGAATCAAGGTTTTGAGGAATTGGGGTTCCCAGGGATGAAACAATTGCCCCAAGATCCTAATCCAATTAGTAGTGTTCATAGCAGAAAGATTGATAATGACCCTGCTATGGCTACCCCAAACGCATTCTCTTCAAGAGATGATTTCAATTCCAAGATTTCAGCCTCTTTGGGGGACTCTAATGGTGGTGGCTGTGATTCACTTATTGACTTGAAGCTTGGTAGGTTTCCTGATCATGGTGATGTTGGTGTGGTGGTGCCAGCATTCTCCAAAGGGGCCCCTATTTTGTCGTCATCGGAGTCGTCCACGCCGCCGAAGAGGGTTCGAGCTTCTGGGATTCACTCTCAGACAGCATACTGCCAGGTCTATGGATGYAACAAGGATCTGAGTGGTTGCAAGGACTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTTCCAAAGTTATTGTCAATGGTATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAACGAGCGGCGGAGAAAACCACAAGTTGGTATSCACTCTGGAAAGCCTGGGAGGTTGCTTCAGCCATATGGTGAAAGCAGATTCCAGGGAAACATGCTAACATCAGCATCTTTCATCTGCCAAGAGATACTCCCWGCTGGGGCCTTATCTTCTGAGAGATATGGAACARGTGACTGGTGGAGACCTATAAAAACCGAAGRCGGCSCTGGTTTTAGGCATCTTTCTTCTGTTCCTATCTCTAATGGACACCCTCAGTCACGACCTCTGTTTCCTTCATATAATGAGAAGCAATTTCCCTTTCTTCATGAAAATAATGATGCTACATCTGCTGGGGGTAGCATCTTCTGTGAAAATAATAGCTCATATCYACCTGCCATAGGAGGWCCGAACTCGGGGTCACAATCATTATTCCAGGACACGTCCATAGGAGGTGAGGACTTCAATGTTTTCGATACAGAATCGGCTGTTCAAGGACTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAGTCATCTGGAATTCCCATGGCTCGMTCAATGGTCATTCGGAGCAGCCATAGCAGTAGCCATTATGCCATGAGCCAGGTCTCTGAAAAGATGATAGGAATAACTTCGCAAGCTTCGAGTGGAGTCTCCGATAGGTTTCCATCYGAGTTGAATCCTGCAGATGGAAGTCCTCTTAGCTCTGTGCTGATATCTGACACCAATGACATTGTCAACTTTGAAATGGCAGATGGAATATTCCATGGTTCAGATTTTGTGAATGTGAAAGATCGTCTCTCATGTGATGATGTCCCGACTATCGACTTGCTTCAACTGTCTTCGCAGCTTCAGCGAGTTGAGAGTGAGAGACAATCCTTGCAGGTGAAGCAAGAAAATGATTCATCAGTCTCTCTCCGGATTACTTAA 1644 0.4532 MESWSYVSEEKGYVSNDAISPPNSVGRNSKGSFLGWELKTPGGFSIENQGFEELGFPGMKQLPQDPNPISSVHSRKIDNDPAMATPNAFSSRDDFNSKISASLGDSNGGGCDSLIDLKLGRFPDHGDVGVVVPAFSKGAPILSSSESSTPPKRVRASGIHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGXHSGKPGRLLQPYGESRFQGNMLTSASFICQEILPAGALSSERYGTXDWWRPIKTEXGXGFRHLSSVPISNGHPQSRPLFPSYNEKQFPFLHENNDATSAGGSIFCENNSSYXPAIGGPNSGSQSLFQDTSIGGEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARSMVIRSSHSSSHYAMSQVSEKMIGITSQASSGVSDRFPSELNPADGSPLSSVLISDTNDIVNFEMADGIFHGSDFVNVKDRLSCDDVPTIDLLQLSSQLQRVESERQSLQVKQENDSSVSLRIT* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3158 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 547 IPR044817 GO:0003677
Amo20g3158 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 37 547 - -
Amo20g3158 547 MobiDBLite consensus disorder prediction 55 91 - -
Amo20g3158 547 SUPERFAMILY SBT domain 164 243 IPR036893 GO:0003677|GO:0005634
Amo20g3158 547 Pfam SBP domain 166 239 IPR004333 GO:0003677
Amo20g3158 547 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Amo20g3158 547 Coils Coil 515 535 - -
Amo20g3158 547 Gene3D - 157 227 IPR036893 GO:0003677|GO:0005634
Amo20g3158 547 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3158 Amo-Chr20 136792095 136796312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3158 115 282 SBP-box Gene Family AT1G69170 53.571 2.62e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo20g3158 SBP 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3158 - - gmx:100777766 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3158 20 136792095 136796312 Amo20g3158 20 136792095 136796312 ECH