Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3155 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAACCGCCAAGTCACTTTCTCGAAGAGAAGAGCGGGGTTGCTTAAGAAGGCGAACGAGATCTCAGTTCTCTGCGATGCTGAGGTGGCTCTCATCGTCTTCTCYTGCAAAGGGAAGCTCTTTCAGTTCTCCAGTGACCCCTGCATGGAGAAGATACTTGAAAGGTATGAGCGGTATTCATATGCAGAGAGGCAGCTCGTTGCAAATGATCAAGGACCAAATGAAAATTGGACTCTAGAATATGCAAGGCTCAAAGCAAGGGTGGAAGTCTTAGAGAGAAATCAAAGGAATTTTATGGGACAAGATCTGCAATGCTTAAGTCTAAAAGAGCTTCAGAATTTAGAACAGCAGCTTGATTCTGCYCTCAAACAAGTTAGATCACGAAGGAACCAACTCATATATGAGGATATCTCAGTGCTTCAGAAAAAGGAGAAGACCCTACAAGAACAAAACACCTTGCTAGCTAAGAAGATCAAGGAGAAAGAGAAAGCAATCACACAACAAGCTCAACTGGAGCTGCAAAATAACTTTATGGATCTAACCCCCTTTGTTGTGGCACCTCAATCCTCGGAGATGAACATTGGCGGGTTCCCACAAGGTAGAAGTGATGGCGAACATAATGAAGACATGGCAGCTAATGCTCGTGCTAATAATACCCTTCTTCCCCCATGGATGATTCGTCCTATAAATGAATAG 738 0.4404 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSSDPCMEKILERYERYSYAERQLVANDQGPNENWTLEYARLKARVEVLERNQRNFMGQDLQCLSLKELQNLEQQLDSALKQVRSRRNQLIYEDISVLQKKEKTLQEQNTLLAKKIKEKEKAITQQAQLELQNNFMDLTPFVVAPQSSEMNIGGFPQGRSDGEHNEDMAANARANNTLLPPWMIRPINE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3155 245 Coils Coil 88 115 - -
Amo20g3155 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Amo20g3155 245 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Amo20g3155 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Amo20g3155 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g3155 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo20g3155 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo20g3155 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo20g3155 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo20g3155 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo20g3155 245 Coils Coil 154 188 - -
Amo20g3155 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Amo20g3155 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo20g3155 245 Coils Coil 122 145 - -
Amo20g3155 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 218 - -
Amo20g3155 245 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g3155 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3155 Amo-Chr20 136602739 136610804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3155 1 231 MADS-box Gene Family AT1G26310 58.776 1.15e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo20g3155 K-box 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3155 K09264 - gmx:100784742 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2418 11 128754692 128762562 Amo20g3155 20 136602739 136610804 ECH
Amo14g3842 14 143935170 143940484 Amo20g3155 20 136602739 136610804 ECH
Amo20g3155 20 136602739 136610804 Amo20g3155 20 136602739 136610804 ECH