Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3154 ATGGGGCGAGGGAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAGAGGAGAGCTGGTTTGGTTAAGAAGGCTAACGAGATCTCCGTTCTCTGTGATGCCGAGGTTGCTCTCATCATCTTCTCTACCAAAGGGAAGCTCTTTCAGTTCTCTAGCGATTCCTGTATGGAGAGGATAATCGAAAGGTATGAAAGGTATTCATATGCGGAGAGACAGCAGCTTGTGGCGAATGCTCAGGGACCAAATGCAAACTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTCTTACAAAGGAATCAAAGGCATTTTATGGGTGAAGATCTTCAAGGCCTAAGTATGAGAGAACTTCAGAATTTAGAACAACAGCTTGATTCTGCTCTTAAACAAATTAGATCACGAAAGAATCAAATCATGTATGAGAATATCTCACTGCTTCAGAAAAAGGAGAAAGCTCTAAATGAACAAAACAATTCACTAGCTAAGAAGATCAAGGGGAAAGAAAAAGCTACCACAGAACAGACTCGTCAATTGGAGCTGCAAGATAATTATACTGTTGCACCTCAAACCTCAGAAAACTTGAATATTAGAGGAATGCCACAAGATAGAAGTGATAATGAAGAASATAATGATAATGAAGAAGGTATCCAAATTAATGCTAGTGCTAATATCCTTCTTCCCAATTGGATGATTCCTCCTACAAATGAATAG 738 0.3984 MGRGRVQLKRIENKINRQVTFSKRRAGLVKKANEISVLCDAEVALIIFSTKGKLFQFSSDSCMERIIERYERYSYAERQQLVANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIKGKEKATTEQTRQLELQDNYTVAPQTSENLNIRGMPQDRSDNEEXNDNEEGIQINASANILLPNWMIPPTNE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3154 245 Coils Coil 89 109 - -
Amo20g3154 245 Coils Coil 123 146 - -
Amo20g3154 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo20g3154 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Amo20g3154 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g3154 245 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Amo20g3154 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo20g3154 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo20g3154 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo20g3154 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo20g3154 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 222 - -
Amo20g3154 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g3154 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Amo20g3154 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo20g3154 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Amo20g3154 245 Coils Coil 152 179 - -
Amo20g3154 245 MobiDBLite consensus disorder prediction 198 225 - -
Amo20g3154 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3154 Amo-Chr20 136571325 136580300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3154 1 211 MADS-box Gene Family AT1G26310 57.642 1.79e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo20g3154 K-box 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3154 K09264 - rcu:8265057 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2423 11 128845643 128851769 Amo20g3154 20 136571325 136580300 ECH
Amo20g3154 20 136571325 136580300 Amo20g3154 20 136571325 136580300 ECH