Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3152 ATGGGAAGAGGGAAGGTTGTGCTGAAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATGATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCATGATGAAAACCATAGAGAGATATCATATGCACAAGTATAGCTTGCCACAGACCACCCAAGTAAGAAACCATGACACTCAGCCTCAGAATACTTACCAAGACTATGTGACATTGAAAGCATACGTAGAACTCCTACAACGTTCACAACGGTCAACTAAGCCAGTTCATCGTTCTTTAAAAACCTTCTGTTCATTTTTGTCACAATCTAAATCCCCATGTCATTTTTTTTTTCCTTTTAATTTTTTATATATTATTGACTATTATTGTTGGTTACTCCATGCAGGAGAGAGCGCTTGTTGA 486 0.393 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSNRGKLYEFSSSSSMMKTIERYHMHKYSLPQTTQVRNHDTQPQNTYQDYVTLKAYVELLQRSQRSTKPVHRSLKTFCSFLSQSKSPCHFFFPFNFLYIIDYYCWLLHAGESAC* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3152 161 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 113 - -
Amo20g3152 161 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo20g3152 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo20g3152 161 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 113 - -
Amo20g3152 161 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo20g3152 161 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Amo20g3152 161 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Amo20g3152 161 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Amo20g3152 161 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Amo20g3152 161 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo20g3152 161 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo20g3152 161 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3152 Amo-Chr20 136539376 136546088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3152 1 112 MADS-box Gene Family AT2G03710 66.372 1.53e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo20g3152 SRF-TF 7.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3152 - K09264 gmx:100797819 159.844