Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3133 ATGATCTCCTCTGGCAGGTTCTCCTCCGGCGTCGCGTTCTCCTCCTGCTATAATCTCCGTTGTTTCCTCCAACGATCTTCTCCAGCAGCGATCTTCTCCGGTGGTGATCTCCTCCATCAATGCATCTCTTCCATTAATGAGATCTGTTGCGCAAGTGTTTCCTGCGGCATCGAGTTGTGTTCTGCGACTTCTCCATCTCCATCGAGCTTCGTTGAGCATCTAGGTTTTCGATTTTCTTCACTGTCAGAAGAAATTGGAGGAAGATGTGTCAGAAACTTAGTCAAATTCGGGGATGGAAACTCGTACGGAGTCTCAAAAGCACTGAGTAGGTTGGTGCTGCTTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATTCGGATCCACTGTGAGAAACACAAAGGAGTGTTGATGTACATTCTCAAGCTCATTGACAAACTCCATCTCTCTGTTCTTAACACCACTTCCTTGCCTTTTGGAACCTCCATTGTTGACATAACCATCACTGCCAAGGTGATTAATGTTTCGTCACCCAATACTCCTGGCTTGCGCATGCTTCAAGGAAGAAAGCAATTGAAGGATCTTGTGAAGAAGGTAGAAACTAAAATGTACAAGCTGCTTGTGATGAAATGCAATGGGGGTGACGAGGGTCCACCTCCGTTGCTGGTAAAAATTGCTCCAGATTTGTCAAAAGACGACCTTGAAGACATTGCTGCAGTTGCTGTGGACCTTAATATTAGTCTATACACTTTGATTATATCAAATACAACCATTTCCAGACCAGATACTGTTAGTAGCAATCCATTAGCTTCAGAAGCTGGTGGGTTGAGTGGGAAGCCTCTTCTTGATCTCTCTACCAATATCTTYAAGCAGATGTATATCTTGACACYGGGCAAGATTCCTTTAATTGGCTGTGGGGGCATTAGCAGTGGTGAGGATGCATACAAGAAAATAAGATCTGGAGCAACTCTTGTTCAGCTATATACTGCTTTCGCTTATGGGGGACCTGCACTTATTCCACAAATGAAGGTGGCTGCTCTTGTTCCTAAAGGGGAGCTTGATGGTGAAATGGGGGATGCACACATGGCAATGCAGGCTAGGTTGATGAGCCAGACCCTTTAG 1125 0.4542 MISSGRFSSGVAFSSCYNLRCFLQRSSPAAIFSGGDLLHQCISSINEICCASVSCGIELCSATSPSPSSFVEHLGFRFSSLSEEIGGRCVRNLVKFGDGNSYGVSKALSRLVLLEVEARVSEKNVLIRIHCEKHKGVLMYILKLIDKLHLSVLNTTSLPFGTSIVDITITAKVINVSSPNTPGLRMLQGRKQLKDLVKKVETKMYKLLVMKCNGGDEGPPPLLVKIAPDLSKDDLEDIAAVAVDLNISLYTLIISNTTISRPDTVSSNPLASEAGGLSGKPLLDLSTNIFKQMYILTXGKIPLIGCGGISSGEDAYKKIRSGATLVQLYTAFAYGGPALIPQMKVAALVPKGELDGEMGDAHMAMQARLMSQTL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3133 374 ProSitePatterns Dihydroorotate dehydrogenase signature 2. 303 323 IPR001295 GO:0006207|GO:0016627
Amo20g3133 374 Gene3D Aldolase class I 93 349 IPR013785 -
Amo20g3133 374 PANTHER DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL 172 345 - -
Amo20g3133 374 CDD DHOD_2_like 173 344 IPR005719 GO:0004152|GO:0006207|GO:0016020
Amo20g3133 374 SUPERFAMILY FMN-linked oxidoreductases 170 343 - -
Amo20g3133 374 Pfam Dihydroorotate dehydrogenase 172 344 IPR005720 GO:0005737|GO:0016627
Amo20g3133 374 Pfam recA bacterial DNA recombination protein 344 374 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo20g3133 374 PANTHER DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED 172 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3133 Amo-Chr20 135882161 135884817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3133 116 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 50.000 5.10e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3133 K00254 - ahf:112783071 320.857