Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3120 ATGGATCATCATCACCACAACAATCATAATCATCATGATGCAGAGATTTATGCAGATGCTGATGATGCAGATAAAGATTTGTGGCTCAACACAACAACAGAACAAGAAGATTTACTTGTTGGGGATGTGAAAACAGATGCATCTATGTTCTACGACGAGTTCCCTCCTCTCCCAGATTTCCCATGCATGTCTTCATCATCGTCTTCGTCTTCAACTCCAACACTTCCATTGAAGAATCTAGCATGCTCAACCACCTCGACCACAACGGCTACCGCAGCAACCTCTTCGTCTTCGTCGTCTGCTTCTTCTTGGGCAGTTCTGAAGCCAGAAGCGGAGGATAATAACAACGGAGAATGGAACTGCAGTAATAAACAGCAACTTTACATGCAACATCATGATCCACTGGACGCAACGGGAGCGTTGTCCTCAACAGCTTCCATGGAGATTTCACAGCCAAAGTTTCCGGATCAAGATGGATTTGACGGTGTTGTTGGTGAGGTTGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTTCTAGAAGCCAACGAGTTCTTTGACCCTTCGTCTATCTTCCAAGGCGAAGAGAATCCCTTAGCGGAATTCACACAAGAGGATCAGGTTTTGCCACAGCAAGAAGAACAACAGAAGCAAGAAAAACCTGCAGTAGTTCATAATCAAAATGATCTTGTTGTTCTTAGACCACAGCAAGAAGCAGTAGTGGAAGGTGTTAGTAACAATAATTATGAACAGCTTCTTGGGTTGTGGGAAGCCAGTAACAATAACGATGTAGAGATCCAAGCAGATGCTGGTGGTGGTGGTGCAATTGCGGATGATGAAATGAGTATGGTGTTCCTGGAATGGCTGAAGTCGAACAAGGATAGCGTATCCGCGAGCGATTTGAGGAGCGTGAAGCTTAAGAAATCCACAATAGAGAGTGCTGCTAAGCGATTGGGCGGTGGAAAAGAAGCTATGAAGCAATTGTTGAAGCTGATTCTTGAATGGGTTCAAACCAGCCACCTTCAGAGTAAAAGGCGCAAGGAAAATAATAACGATAACGCAGTGTCAAACCCTTTCACGGAACAGTTTCAAAATCCAATTCATCAAAACCAGAACAACGCAAATGCTTCGAGTTCTTTTGTCATTGAACCAAACACATGTTTCACCCAGCAGCAACCATGGATGGATCAAGCACCTCTAATGGCAGCCGCTCCTCCGCCTCAGTTTCAGCCTCAGCCGCAATTTCAACAACCCATGGTTGGGTATGTTGGCGACCCTTACACAAACGCTGCTTCTGCAAACACCATGAATGGCAGCAATAATTTTCAGGCTGGTAATGAATACCATATGCTGGAATCGGCGAACTCATGGCCTCCTTCTCAATACACTGTTACTGCTTACTATACCCAGCCATTTGGGGACCATTGTTTTCAACCTCCGGCGGCGGGTGGCTTCGGTAACCAGTACCCTTATCAGTTTTTCCATGGACATGGTGATGGATTGATGAGATTAGGACCCTCAGCTACAAAAGAAGCGAGGAAGAAGCGGATGGCGAGGCAGAGAAGGCTTTCCTCTCATTCTAGGCATCATATTAATCTACAGAGTCAGGGTTCTGATCCAAATGCAAGATTGGGTGTTGGTGGTGAAAATTGCACTGGTGTTGTATCTGCAGCTCCGGCTAATTGGGTGTATTGGCCAACTATGGCTGGTGCTGTTGCTTCCGTTGCGCCCGTGGCTCCCGCGGAACCGTCGGCTGTGGTGGATAAACCTGCCATGCAGACACAGAATTATCATCATCAGGGTCGGCTCTCATCTGATAGGAGACAGGGTTGGAAGTCGGAGAAGAACTTACGATTCCTTTTACAAAAGGTGTTGAAGCAAAGCGATGTTGGAAGTCTGGGAAGAATTGTTCTACCAAAAAAAGAGGCAGAAACACATCTACCAGAACTAGAGGCAAGGGATGGAATCACCATAACAATGGAAGATATTGGCACCTCTCGTGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATTTGCTAGAGAACACAGGTGATTTTGTTAAAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGAAAATTTATGATAAGAGGAGTTAAAGTAAGGCAACAAGAAGGGGCGAAAGCAGAGGGCAAGAAAACAGGAAAATCTCATAAAAACCAGCATGGGAACAATGCGGTGCCTACAGCTGGTGAACCTCATACGAATGCCACGTCATCATCCACTCATCAAGAAAATGAAAAATAG 2319 0.4524 MDHHHHNNHNHHDAEIYADADDADKDLWLNTTTEQEDLLVGDVKTDASMFYDEFPPLPDFPCMSSSSSSSSTPTLPLKNLACSTTSTTTATAATSSSSSSASSWAVLKPEAEDNNNGEWNCSNKQQLYMQHHDPLDATGALSSTASMEISQPKFPDQDGFDGVVGEVDCMDDVMDTFGYMELLEANEFFDPSSIFQGEENPLAEFTQEDQVLPQQEEQQKQEKPAVVHNQNDLVVLRPQQEAVVEGVSNNNYEQLLGLWEASNNNDVEIQADAGGGGAIADDEMSMVFLEWLKSNKDSVSASDLRSVKLKKSTIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQSKRRKENNNDNAVSNPFTEQFQNPIHQNQNNANASSSFVIEPNTCFTQQQPWMDQAPLMAAAPPPQFQPQPQFQQPMVGYVGDPYTNAASANTMNGSNNFQAGNEYHMLESANSWPPSQYTVTAYYTQPFGDHCFQPPAAGGFGNQYPYQFFHGHGDGLMRLGPSATKEARKKRMARQRRLSSHSRHHINLQSQGSDPNARLGVGGENCTGVVSAAPANWVYWPTMAGAVASVAPVAPAEPSAVVDKPAMQTQNYHHQGRLSSDRRQGWKSEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQEGAKAEGKKTGKSHKNQHGNNAVPTAGEPHTNATSSSTHQENEK* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3120 772 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 771 IPR044800 GO:0003700
Amo20g3120 772 MobiDBLite consensus disorder prediction 90 105 - -
Amo20g3120 772 Gene3D - 620 740 IPR015300 -
Amo20g3120 772 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 771 - -
Amo20g3120 772 MobiDBLite consensus disorder prediction 744 772 - -
Amo20g3120 772 MobiDBLite consensus disorder prediction 727 772 - -
Amo20g3120 772 SUPERFAMILY DNA-binding pseudobarrel domain 623 720 IPR015300 -
Amo20g3120 772 MobiDBLite consensus disorder prediction 524 545 - -
Amo20g3120 772 MobiDBLite consensus disorder prediction 90 121 - -
Amo20g3120 772 SMART B3_2 624 724 IPR003340 GO:0003677
Amo20g3120 772 MobiDBLite consensus disorder prediction 727 741 - -
Amo20g3120 772 CDD BfiI_C_EcoRII_N_B3 622 723 - -
Amo20g3120 772 Pfam B3 DNA binding domain 625 721 IPR003340 GO:0003677
Amo20g3120 772 ProSiteProfiles B3 DNA-binding domain profile. 624 726 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3120 Amo-Chr20 135663665 135669928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3120 13 772 B3 DNA Binding Superfamily AT3G24650 42.278 3.90e-154 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo20g3120 B3 6.4e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3120 - - ahf:112742109 1350.88