Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3117 CAGCGGTTCAAAAAGACAACTGCTAAAAGGCAAGATTTTGGCGGTTGCGCTTCTGGATGGTGGTGTGCAGCAAAATTACTAGAATTTGCGCCCGCTGCACCTTCTGCCCTCCTTTCCTCTCTCTTGCCCTTTCTTGCAGACATTGATCCATTGTCATCTTGTGTGCTGAAGATCTCACTTCGCATAGTCATGGTCTTCTGTGTAGTCACAGTCATAATCTCTCTCCACGCAGTTTGCAGCTGCCATCATCCTCTACACAGTTCCTACCCGCTCATGAGGCTGCAAGAGAGGAAGCATATATGTGGAATGATAGGTGATGGTGTCAACGACGCCCCTGCATTAAGGAGAGCAGAAATTGGAATTGCTGTTGCTGATGCTACATACGCTACTAGAAGTGCTTCTGATATTGTCTTCACTAATCTTGGTCTTAGTGTCATTATTATGGTCACTATTGGGTCTTTTCTCTGTCTTTCCTCAAATTCTACCTGGGCTTGTATATTTGGTGATATTGAAGTGCTTGCTGAGATAATTCAGCATGGTGTTATTTGTTGTGAAGCTCCCTCCCACCTTCTTGGAAAGACTAATAGTTGCATTCGTTGTAACTCAACAAAAACAGAAATTGCTAGAAGCCAAGACAAGCTGTTATTACTTGTTACATTTGCACAAATGCTCCTTTCTGCTCCAACTAAAAAGAATGACAATATGGAACCTGTATATCATCTTCCAGTGGAACAGAAAGCAGATGATGATTCATGGGGCCTTGTTATAGAGGCTCTTCTAGCAGGCAGTGGAACTTCATCAGGTACTATTGATTGTCTTCTTGAAGAGCTCTTGAAGGATAAGCTACGGCTATGA 855 0.4316 QRFKKTTAKRQDFGGCASGWWCAAKLLEFAPAAPSALLSSLLPFLADIDPLSSCVLKISLRIVMVFCVVTVIISLHAVCSCHHPLHSSYPLMRLQERKHICGMIGDGVNDAPALRRAEIGIAVADATYATRSASDIVFTNLGLSVIIMVTIGSFLCLSSNSTWACIFGDIEVLAEIIQHGVICCEAPSHLLGKTNSCIRCNSTKTEIARSQDKLLLLVTFAQMLLSAPTKKNDNMEPVYHLPVEQKADDDSWGLVIEALLAGSGTSSGTIDCLLEELLKDKLRL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3117 284 PRINTS P-type cation-transporting ATPase superfamily signature 104 123 - -
Amo20g3117 284 PRINTS P-type cation-transporting ATPase superfamily signature 127 139 - -
Amo20g3117 284 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 148 195 - -
Amo20g3117 284 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 193 284 - -
Amo20g3117 284 SUPERFAMILY HAD-like 70 147 IPR036412 -
Amo20g3117 284 Gene3D - 60 137 IPR023214 -
Amo20g3117 284 SUPERFAMILY E set domains 155 203 IPR014756 -
Amo20g3117 284 Gene3D Immunoglobulins 138 212 IPR013783 -
Amo20g3117 284 PANTHER CALMODULIN-BINDING PROTEIN 148 195 - -
Amo20g3117 284 PANTHER CALMODULIN-BINDING PROTEIN 193 284 - -
Amo20g3117 284 PRINTS H+-transporting ATPase (proton pump) signature 104 120 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g3117 284 PRINTS H+-transporting ATPase (proton pump) signature 135 160 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3117 Amo-Chr20 135565056 135567736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3117 99 282 CAMTA Transcription Factor Family AT1G67310 35.681 1.16e-26 107