Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3104 ATGGATCATTCCACCTCAGATTCTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGACGCTCGGGTGTAGATCAGGTCTTTTTTTGGGTGTATTTTTGCTAGAAGTGTGGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGGAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGACAGCCGGATGTCGGTGCTTGGATTATTTCAAAGGTTGTGCTGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGATGCGTACACTCACGCAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCAAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCACCTAGATACATACTAGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTCAACCAATTGGTTTTTCGTTCGCAAAATATTTGTGAATTTGCCTCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAACAGGCTAGGTTCAAAGCTGGAGAAACAGATCGCAAATGGCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGCTAATGTGTGAGTGTTATATTCAGATAAACCTGTTTGATGCTGCATCAGCGGCGCATTCAAATTCCAGCGAATATCAAGGACAAGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGTATCCGGGAAGCATACTCCACTCTATAGTGGTCCACCTCCTCCTACAATTAAAAAACTCACAAATTTATACCTTGTTTTTTGGCCTGATATTTTAACATATGATGATTTAATTTTCTTCTCGTTCTCCCCTTTCTGCAGAGGTTCCCCGCCGGCATATGTTATCAATCTTGAAAATACATATCCCTTAAATAGCAAAACAAATCAGTAA 1515 0.4403 MDHSTSDSQLNPGEVDYEFESNEVPETLGCRSGLFLGVFLLEVWPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGCRCLDYFKGCADHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEADAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFKSRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFNQLVFRSQNICEFASESEELTAILHRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLEKQIANGTKKKKTKVLSELMCECYIQINLFDAASAAHSNSSEYQGQVMNYQFRVPAAGDNSLVSGKHTPLYSGPPPPTIKKLTNLYLVFWPDILTYDDLIFFSFSPFCRGSPPAYVINLENTYPLNSKTNQ* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3104 504 PANTHER OS03G0843700 PROTEIN 50 152 - -
Amo20g3104 504 SMART 26again6 227 254 IPR006564 GO:0008270
Amo20g3104 504 MobiDBLite consensus disorder prediction 334 370 - -
Amo20g3104 504 MobiDBLite consensus disorder prediction 342 356 - -
Amo20g3104 504 Pfam SWIM zinc finger 218 249 IPR007527 GO:0008270
Amo20g3104 504 PANTHER OS03G0843700 PROTEIN 167 323 - -
Amo20g3104 504 ProSiteProfiles Zinc finger SWIM-type profile. 216 252 IPR007527 GO:0008270
Amo20g3104 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 152 IPR031052 GO:0006355
Amo20g3104 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 323 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3104 Amo-Chr20 135207117 135211175 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g3104 SWIM 0.00034 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3104 - - adu:110276980 469.929