Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3087 ATGTCGCTGAATATGAAAACCCTAACCCAAGCGCTGGCGAAGACCGCGGCGGTCATAGAGAAAACGGTTCAGACGACGGTGCAGGAAGTCACTGGGCCCAAGGCCCTCCAGGACTATGAGCTTCTTGATCAGATCGGCTCCGCCGGGCCGGGCCTGGCATGGAGGCTATACTCTGGCCGGTCCAGGGACCCATCGCGGCAGCACCAGTACCCGGTCGTGTGCGTGTGGGTGCTCGACAAGCGGGCCCTCTCAGAGGCCCGAATGCGGGCCGGGCTTACCAAAGCAGCCGAGGATTCGTTCCTGGATTTGATCCGCAAAGACGCTGCGAAGCTCGTGCGGCTGCGGCACCCTGGCGTGGTCCACGTGGTCCAGGCACTTGATGAGAGCAAGAACGCCATGGCAATGGTCACCGAGCCTTTGTTTGCTTCGGTTGCTAATACGCTGGGAAATTTGGAAAATGTTCCCAATGTTCCTAAGGAGCTCCGGGGAATGGAAATGTCACTGTTGGAGGTGAAGCATGGTTTACTTCAGATGGCAGAAACGTTGGACTTTCTCCACAACCATGCTCATCTCGTTCATCGAGCTATATCACCTGAGAATATTCTTATTACTTTGAGTGGAGCATGGAAACTCAGTGGATTTGGTTTTGCAATTTCAGCTTCTCAGACACATGGTGACTCGGCTAATCTGCATGCCTTCCATTATGCTGAATATGATGTTGAAGACTCTGTTTTACCACTTCAGCCATCACTTAATTACACGGCTCCTGAGTTGGTGAGGAGCACTGTGCCTTCTGCAGGCTGGTCTTCTGATATTTTCAGTTTTGGATGTGTTGCCTACCATTTAATTGCTCGCAAATCTTTGTTTGACTGCCACAACAATGTGAAGATGTACACAAACACTTTGACTTACTTATCCAGTGATGCTTTCTCGTCTATCCCATCAGAACTGGTTCATGACCTGCAAAGGATGCTTTCTCCAAATGAGTCTTCGAGGCCAACAGCAATGGATTTTACAGGCTCTCCATTTTTTCGGACTGACACCAGATTGCGTGCTTTGCGGTTTCTCGATCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGACATGTGGAAAGATTTTGATTCCCGTGTATTGCGTTACAAGGTCCTTCCGCCACTTTGTGCTGAACTTCGGAATGTTGTGATACAGCCAATGATTCTACCAATGGTTCTGACCATTGCAGAGTCTCAGGACAAGAATGATTTTGAGAACTCAACACTTCCAGCCCTTGTACCTGTCCTGAGTAGTGCTTCTGGTGAGACATTGTTACTCTTGGTGAAGCATTCCGAGCTTATAATAAACAAGGCTAGTCAAGAGCATTTAATTTCACATGTTCTTCCAATGATTATTCGGGCCTATGATGATACCGATGCTCGTTTACAAGAGGAGGTCCTGAAAAAATCTGGATCTCTTTCCAAGCAACTTGATGCCCAGCTAGTGCAACAAGTGATTTTGCCCCGTGTTCATGGGTTAGCACTTAGAACAACAATTGCAGCGGTTAGAGTGAATGCTTTCCTTTGCCTAGGAGAAATGGTTAGCCGACTTGATAAACCTGCTGTCTTGGATGTCTTGCAAACTATTCAGCGGTGTACTGCTGTTGACCATTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCGGTTTGGTGTAGAATTTGTTGCGGAACATGTTCTTCCATTAATTGTGCCCCTCTTGACTGCACAACAACTGAACATCCAGCAGTTTGCCAAATATATGCTCTTTGTGAAGGATATGCTCCAGAAGATTGAAGAGAAGCGTGGAGTAGCTGTGACTGGTTCTGGTATCCCAGAGGTAAAAGCATCTCCTATGGTTAATGGACTTCAAAGTGAAGCACCAAGGATGAGTAGCAGCACTGTGGCTTCTTCAACCAAAAGTAGCTCCCGTTGGGATGAAGATTGGGGTTCCACAGCAAAGGGAACCACCGCAGCTGTCCAGAATTCTGTTAATGCATCTACTCAATCTGTGCTCAGCAACCCTATTGGCCATTTAACATCTTCACAAAATAATTTGCCATCATCTGCTGTTTCTAATCAACAGGCTATCAATTCGTGCCCTTCAGTAGATATAGAGTGGCCACCTCGTTCATCTTTTGACATTGCCCATCAAAATGGTGATGCTGAAAGGGGTGCAGTTGCAGGAGGAACCTCATCCACATCTAATAGCCTTGAAGATATTGATCCTTTTGCTAATTGGCCTCCACGTCCTAGTGGCTCAACAGGTGGATCTGGAATTTCCAACAATGGTACTTTTGGAACCCCAATGAATAAGATGACAAGCACTTCAAGCAATGTGGGTCTCCAAATGAGCAACAATCAGCCACTTAATTCCCGAAGTTCTGCAGGCCCTGTCAGTTTGAACATCGGGAACAGTATTTCATCCACTGGTAGCCTGAATGGTGGTTTTGAACCTCAGAATTCTATTGGGTTCCAAAAACAGAGTCAACAGTTGCCTGCATCAACTGTTTCATATAACAAGTCAACGGATCTAGGATCAATCTTTGCTTCCAACAAGAATGAGCAAAGTGCACTTAGACTTGCACCACCCCCTTCAACCACAGTGGGTAGAGGAAGAGGCCGTGGAAGGGGGCCTGCTTCAACCAGTAGGCCCTCTCAGACCAGGTCACATTCTGAGCAGCCACCTCTTATGGATTTGTTGGGGTAG 2763 0.4705 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKALQDYELLDQIGSAGPGLAWRLYSGRSRDPSRQHQYPVVCVWVLDKRALSEARMRAGLTKAAEDSFLDLIRKDAAKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNLENVPNVPKELRGMEMSLLEVKHGLLQMAETLDFLHNHAHLVHRAISPENILITLSGAWKLSGFGFAISASQTHGDSANLHAFHYAEYDVEDSVLPLQPSLNYTAPELVRSTVPSAGWSSDIFSFGCVAYHLIARKSLFDCHNNVKMYTNTLTYLSSDAFSSIPSELVHDLQRMLSPNESSRPTAMDFTGSPFFRTDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFENSTLPALVPVLSSASGETLLLLVKHSELIINKASQEHLISHVLPMIIRAYDDTDARLQEEVLKKSGSLSKQLDAQLVQQVILPRVHGLALRTTIAAVRVNAFLCLGEMVSRLDKPAVLDVLQTIQRCTAVDHSPPTLMCTLGVANSIFKRFGVEFVAEHVLPLIVPLLTAQQLNIQQFAKYMLFVKDMLQKIEEKRGVAVTGSGIPEVKASPMVNGLQSEAPRMSSSTVASSTKSSSRWDEDWGSTAKGTTAAVQNSVNASTQSVLSNPIGHLTSSQNNLPSSAVSNQQAINSCPSVDIEWPPRSSFDIAHQNGDAERGAVAGGTSSTSNSLEDIDPFANWPPRPSGSTGGSGISNNGTFGTPMNKMTSTSSNVGLQMSNNQPLNSRSSAGPVSLNIGNSISSTGSLNGGFEPQNSIGFQKQSQQLPASTVSYNKSTDLGSIFASNKNEQSALRLAPPPSTTVGRGRGRGRGPASTSRPSQTRSHSEQPPLMDLLG* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3087 920 CDD PK_SCY1_like 45 345 - -
Amo20g3087 920 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 919 - -
Amo20g3087 920 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Amo20g3087 920 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3087 920 MobiDBLite consensus disorder prediction 872 920 - -
Amo20g3087 920 SUPERFAMILY Protein kinase-like (PK-like) 34 347 IPR011009 -
Amo20g3087 920 Pfam Protein kinase domain 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3087 920 Gene3D - 348 621 IPR011989 -
Amo20g3087 920 MobiDBLite consensus disorder prediction 642 679 - -
Amo20g3087 920 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3087 920 MobiDBLite consensus disorder prediction 769 821 - -
Amo20g3087 920 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 919 - -
Amo20g3087 920 Gene3D Transferase(Phosphotransferase) domain 1 146 347 - -
Amo20g3087 920 MobiDBLite consensus disorder prediction 898 912 - -
Amo20g3087 920 MobiDBLite consensus disorder prediction 741 821 - -
Amo20g3087 920 SUPERFAMILY ARM repeat 347 607 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3087 Amo-Chr20 134803257 134813267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3087 104 349 CBL-interacting serine-threonine protein kinases AT2G26980 25.703 4.62e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Amo20g3087 Pkinase 4.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3087 K17541 - gmx:100796211 1420.99