Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3076 ATGTGGTTGCCAAGGAGTCAACAAGAGAAGGATGGTGTAAATGGATTAGTAGCGGTTGCAATAGACAAAGAAAAAGGAAGCAGGAATGCACTCCAATGGGCCATTGATCATCTCCTCAACAAAGGTTCTACTGTGATTCTCATCCATGTCAAGATTAACTCTAATTCCGCGCCTTCTTTCACCCCAAGATCATTCACCGGATTCATCACCGGTAAAGAATCTATTGGCAGAGAACCTGATGCCCAAAACAAAAGCATTTTCCTCCCATATCGCGTCTTCTGCACACGGAAAGATATACAATGCAAGGACGTCCTAATAGAAGATGTAGACGTTGCCAAAGCGATAGTCGAATATGCCACTCAAGCAGGAATTGAGCATTTGGTTCTTGGATCTTCATCCAAAACCGGTTTGCTCAAAAGATTCAAGGTATCCGATATCCCAGGATCAGTAACGAAAGGTGCACCAGATTTCTGTACAGTCTATGTTGTTTCCAAAGGGAAGATTCAATCGATGCGATCTGCTTCCCGTCCTGCTCCACCATCTGTTGTTCAGCTTAGTTCAGAACAAACAAACTTACAAGTGCAGATGCCTCCAGGTTGGAGAGAGCATGAAAGGTTCTCTTATGAGGGAACGCCACATAGATCGCAGGAGGGAACAACAGAATTCCGGTCTCCATTCACTAGGAAAGGATATCATGATAGGTACACGGAACATTCTGCACCGGATCTTGACATATCCTTTGTAAGTAATGGTAGGCCAAGCTCAGAACGGATGGTCCCCTCGTTTTATACTGCAGAAACAACAACGTCCTACTCCAACCCTCGGTTTTCATATTCCTCAGAACCAGATACAAACTATAGTTTTGAGTCAGTGCCTCAAAGGAGGTCTTTGGATGCTAGCCTTCCTGCTGAATTCCCATCTATCATCTCGTTCGAGAATGTTTCCCCTTCTACATCTGCAGCTGTGGATGATATAGAGGCTGAAATGAGAAGACTGAGGTTGGAGCTCAAGCAAACAATGGAAATGTACAACACAGCGTGTAAAGAAGCACTAACAGCACAACAGAAGGCGGTAGAACTTCAGCGTTGGAAACTGGAAGAAGAGAAGAAATTGGAAGAGGCAAGGCTTGCAGAGGAAGCCGCGTTGGCGATAGCAGAAAACGAGAAGGCAAGATCTAGAGCAGCCCTTGAGGCTGCTGAAGCACAAAAGAGGATAGCAGAGTTGGAAGCACAGAAGAGACTAAATGCAGAAATGAAAGCAATTAAAGAAGCAGAAGAGAAGAAAAAAGCAATTGATGCTTTATCACACTTAGATATTAGGTACAGGAAGTATTCGATTGAGGAGATCGAAGCTGCAACAGAGTTTTTCAAGGAGTCACTCAAGATTGGAGAAGGTGGTTATGGTCCAGTTTATAAGTGCTGTTTGGATCACACGCCGGTAGCAGTGAAAGTTCTACGTCCTGATGCTGCGCAAGGAAGAGCACAATTTCAAAGAGAGGTTGAGATACTAAGCTGCATACGGCATCCAAACATGGTTCTTCTCTTAGGGGCCTGTCCGGAATATGGTTGCCTTGTGTACGAGTACTTGTCTCAGGGAAGCTTGGAAGATCGCCTCTTTCGTCGTGGCAACACTCCATCACTTTCTTGGCAGATCAGGTTCAAAATTGCTGCTGAGATTGGCACTGGCTTGTTATTTCTTCACCAGACAAAGCCGGAGCCTTTAGTCCACAGGGACTTGAAACCGGCGAACATCTTACTCAACAGCAACTTTGGGGCCAAGATCAGTGATGTTGGTTTGGCTAGGCTAGTCCCTCCATCTGTGGCCGACAGCGTGACACAATATCACATGACATCTGCGGCCGGAACCTTCTGCTACATCGACCCTGAGTACCAGCAGACAGGAATGCTTGGGGTGAAATCAGACATATACTCCCTTGGAGTCATTTTTTTGCAGATTTTGACAGCAAGACCACCAATGGGTTTGGCGCATAGCGTCGAAAGATCCATTGAGAAGGGGACTTTTGCACAGATGCTTGATCCAACGGTGCCTGACTGGCCAATAGAGGAGGCCATGAGCTTTGCAAAGTTGGCAATCCGGTGCGCCGAGCTACGAAGGAAAGACAGGCCTGACCTGGCCAAGGAAATCTTGCCAGAATTGAACAGGCTAAGAGACTTAGCTTATAAAGACAATCCATTTTTTGCGGTTGGTAACTCTCTCGACGCACCGTCGGAGGGCCAAGTTTCTCTGAATATGGATTCAGGTCCCTCTAGTTAA 2274 0.4609 MWLPRSQQEKDGVNGLVAVAIDKEKGSRNALQWAIDHLLNKGSTVILIHVKINSNSAPSFTPRSFTGFITGKESIGREPDAQNKSIFLPYRVFCTRKDIQCKDVLIEDVDVAKAIVEYATQAGIEHLVLGSSSKTGLLKRFKVSDIPGSVTKGAPDFCTVYVVSKGKIQSMRSASRPAPPSVVQLSSEQTNLQVQMPPGWREHERFSYEGTPHRSQEGTTEFRSPFTRKGYHDRYTEHSAPDLDISFVSNGRPSSERMVPSFYTAETTTSYSNPRFSYSSEPDTNYSFESVPQRRSLDASLPAEFPSIISFENVSPSTSAAVDDIEAEMRRLRLELKQTMEMYNTACKEALTAQQKAVELQRWKLEEEKKLEEARLAEEAALAIAENEKARSRAALEAAEAQKRIAELEAQKRLNAEMKAIKEAEEKKKAIDALSHLDIRYRKYSIEEIEAATEFFKESLKIGEGGYGPVYKCCLDHTPVAVKVLRPDAAQGRAQFQREVEILSCIRHPNMVLLLGACPEYGCLVYEYLSQGSLEDRLFRRGNTPSLSWQIRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLNSNFGAKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGVIFLQILTARPPMGLAHSVERSIEKGTFAQMLDPTVPDWPIEEAMSFAKLAIRCAELRRKDRPDLAKEILPELNRLRDLAYKDNPFFAVGNSLDAPSEGQVSLNMDSGPSS* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3076 757 PANTHER OS02G0152300 PROTEIN 8 754 - -
Amo20g3076 757 SMART serkin_6 456 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3076 757 Coils Coil 322 342 - -
Amo20g3076 757 CDD STK_N 16 166 - -
Amo20g3076 757 Gene3D Phosphorylase Kinase; domain 1 435 528 - -
Amo20g3076 757 Gene3D HUPs 17 164 IPR014729 -
Amo20g3076 757 Gene3D Transferase(Phosphotransferase) domain 1 529 732 - -
Amo20g3076 757 Pfam Protein kinase domain 457 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3076 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Amo20g3076 757 Coils Coil 348 434 - -
Amo20g3076 757 Pfam Universal stress protein family 17 141 IPR006016 -
Amo20g3076 757 SUPERFAMILY Protein kinase-like (PK-like) 438 711 IPR011009 -
Amo20g3076 757 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 159 - -
Amo20g3076 757 ProSiteProfiles Protein kinase domain profile. 456 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3076 757 PANTHER UNIVERSAL STRESS FAMILY PROTEIN 8 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3076 Amo-Chr20 134597962 134601408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3076 1 749 Receptor kinase-like Gene Family AT1G78940 55.123 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo20g3076 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3076 - - adu:107470848 1306.2