Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3054 ATGGCGGCGACGGAGTCGGATCTTGAATGGTGGAGGACGATGATCGGATTCGACGAAGCATCCAACGGATCTCCCAACGGGGACGACGTCAAGCCCGCCGACTTGAGAGGCAGCGGCGTTTTTTCCGCCACCGTCCTCACCGGCGGATTCTCCGGCTATGTCGGTGACGGCGCCGAAAATCCGGACTATGTGGTAAATTCATTTTCAACTTGTGGGGGAATAGCAGATGCCAATACCGTTGTCTGTTCCCAAAACGTCATTACCAAGAATTCCACCATTTCTGCTACTAATGATTCCCAGTCATCCATGTGTGGCACTGTTGGAAGCCCGGTATCTTCTAATAAACCAAGTGACAGAGACAATCAAGCCAAAGTAGCTACAAGTGGTTCCTCTGAGCCTTCTGATGAGGATGATGAAACTGGTCCTTGTGAACAAAGCACAAATCCTGTTGATGTGAAGCGCCTTAGAAGGAAGGAATCTAATCGCGAATCTGCAAGGAGGTCAAGAAGAAGAAAACAAGCGCATTTAGCTGACCTTGAGATGCAGGTTGAAAAGCTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTAATGATGTTAGACAACAATTTCATGAGGCGGATACTAATAACCGAGTGCTAAAATCAGATGTTGAAGCCTTGAGAGCTAAGGTGAAGTTAGCCGAGGATATGGTCACTCGAGGCTCTGTTACCACGTTAAACAACCAACTTCTTCAGCCTCATTCTCAACTGAGCGCGCCGCCTCATATGGCACACGTGTCGCCGACCATCACTGTCCATGCAAACGATGCCTTATACAATAATGGTGGTGGTGGAGGTGGACAGAATCATCCAGGTCTTGGTGGGCTGGGAGACTTGGATATTCCTTACAATGATATCAACAATGGAGTCATAAACGATGCTCTAAACTCCATGAACATCTGGCAGCAGTAA 954 0.478 MAATESDLEWWRTMIGFDEASNGSPNGDDVKPADLRGSGVFSATVLTGGFSGYVGDGAENPDYVVNSFSTCGGIADANTVVCSQNVITKNSTISATNDSQSSMCGTVGSPVSSNKPSDRDNQAKVATSGSSEPSDEDDETGPCEQSTNPVDVKRLRRKESNRESARRSRRRKQAHLADLEMQVEKLKLENATLYKQFNDVRQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRGSVTTLNNQLLQPHSQLSAPPHMAHVSPTITVHANDALYNNGGGGGGQNHPGLGGLGDLDIPYNDINNGVINDALNSMNIWQQ* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3054 317 MobiDBLite consensus disorder prediction 95 130 - -
Amo20g3054 317 PANTHER BZIP TRANSCRIPTION FACTOR 61 316 - -
Amo20g3054 317 CDD bZIP_plant_GBF1 154 205 IPR045314 GO:0003700|GO:0006355
Amo20g3054 317 Gene3D - 152 209 - -
Amo20g3054 317 SUPERFAMILY Leucine zipper domain 152 205 IPR046347 GO:0003700|GO:0006355
Amo20g3054 317 Coils Coil 211 231 - -
Amo20g3054 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 156 171 IPR004827 GO:0003700|GO:0006355
Amo20g3054 317 Coils Coil 162 203 - -
Amo20g3054 317 PANTHER BASIC LEUCINE ZIPPER 63 61 316 - -
Amo20g3054 317 SMART brlzneu 149 213 IPR004827 GO:0003700|GO:0006355
Amo20g3054 317 MobiDBLite consensus disorder prediction 95 174 - -
Amo20g3054 317 Pfam bZIP transcription factor 152 203 IPR004827 GO:0003700|GO:0006355
Amo20g3054 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 151 214 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3054 Amo-Chr20 134138957 134144015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3054 98 290 bZIP Transcription Factor Family AT5G24800 53.398 4.41e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo20g3054 bZIP_1 5.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3054 K25784 - gmx:778193 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3054 20 134138957 134144015 Amo20g3054 20 134138957 134144015 ECH
Amo10g2477 10 86616789 86622553 Amo20g3054 20 134138957 134144015 hybridization
Amo20g3054 20 134138957 134144015 Amo06g3107 06 98127559 98134151 PCT