Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3043 ATGAATCTGCCATCTCCCAACTTCAATGCTTTTGATCTCATCAAGATGTTTGGCCAACATGGCTTTTCAGCACAAGAGATGACACTGTCCAGAACATACAGTGATAGTAATAATGCTGAGCATCCCTTTGATGAAACAAGGAATGATTTCGATAACTTGTACTTCGAGGCTTTTGATTTCCGTCTCACATCGGATCAAACATTGTTCATTAGTCCAAGAACTAGGAACTTTGTCAACTCTTATGCACAAAACGAAGCCTTGTTCTTCTTGGATTTTCAACAAGCCATGATCAAAATGAGCTTGCTTGATATCAAAGAAGACTCCAATACTCCTCGAGTTCTGGCACCACCTTCGCCGATTCCTGATGCGTATCTGCTCCAGTCTGGCGATCACCAAGGGCTCGTGCTTATTTCACAACCCCTAGAAGAAGACAACCACGCTTCTTGGTGCAGATCGATGAGACTTGCGTTGAGTGGAAAATGCAAAATCTGCTTCATCGATGGCTCCCTCCCAAAGCCAGATCCAGTTCTTGACCATGCGCTCACTGAATCGTGGCAGTGCACAAACGACATCGTCACTACGTGGTTGCTGAATGCGATCTCCAAGGATATTGTGGCAAGCGTCATCTATGCTGGATCCGCGGCTTTACTCTGGCAAGATTTGGAGACTCGCTTCTCTCAGAACAACGCACCTCGCATCTTTGAGCTGAAGAGGTCACTCGTGTCTCTGACTCAAGGCTCTCTCTCGGTCTCACAGTATTTCACAAAGTTGAAGATACTTTGGGAAGAACTCAACACCTTCAAGCCATTGATCCTATTGTCAGATCCACTGCCTCCGATTGGAAAAGTCTTTTCTCTTGTGTTGCAAGAGGAGAAGCAGAGAGCACTCACCTCTCCAAGCCAACATATGGCTTTTGCTGTTAAACAGTATCCAAGACCCACCGCTCCTTCTGGACCCAAGGTGAAAGGGAGGAAAGATTGTCCACTCTGTGCTCATTATGGGTTGCTGGGACATAATGAGGATAAATGTTATCGTCTCCATGGATATCCTCCTGGATATTCCCAGAACAAGCCTGTGAATGCCAAATCCCAAGTGCATCATGTTGCCAAGGTCGCTCATGATCAAGAAAGCCAAGATCCATCTCCAACATCCATCTTTTCACTTACAGCAGCTCAGTCCAACCAATTGATGACTCTCTTGCAAACTCAGCAAGCTCTTCAGGACATTGAACCTGAAATTTGTGCAGGTGAAGTGTTTTCCTCATGTTATTCGAATCAAATGGCAGAGGACATGACCTCCAAGAAGGTGATTGACAGAGGTGATGAAACTGATGACCTGTTTCTGCTACAATAA 1353 0.4538 MNLPSPNFNAFDLIKMFGQHGFSAQEMTLSRTYSDSNNAEHPFDETRNDFDNLYFEAFDFRLTSDQTLFISPRTRNFVNSYAQNEALFFLDFQQAMIKMSLLDIKEDSNTPRVLAPPSPIPDAYLLQSGDHQGLVLISQPLEEDNHASWCRSMRLALSGKCKICFIDGSLPKPDPVLDHALTESWQCTNDIVTTWLLNAISKDIVASVIYAGSAALLWQDLETRFSQNNAPRIFELKRSLVSLTQGSLSVSQYFTKLKILWEELNTFKPLILLSDPLPPIGKVFSLVLQEEKQRALTSPSQHMAFAVKQYPRPTAPSGPKVKGRKDCPLCAHYGLLGHNEDKCYRLHGYPPGYSQNKPVNAKSQVHHVAKVAHDQESQDPSPTSIFSLTAAQSNQLMTLLQTQQALQDIEPEICAGEVFSSCYSNQMAEDMTSKKVIDRGDETDDLFLLQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3043 450 Pfam gag-polypeptide of LTR copia-type 129 174 IPR029472 -
Amo20g3043 450 Pfam Retrotransposon gag protein 193 265 IPR005162 -
Amo20g3043 450 SUPERFAMILY Heme-dependent peroxidases 2 122 IPR010255 GO:0004601|GO:0006979|GO:0020037
Amo20g3043 450 Gene3D Peroxidase, domain 2 4 123 - -
Amo20g3043 450 PANTHER OS02G0671800 PROTEIN 179 404 - -
Amo20g3043 450 PANTHER - 179 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3043 Amo-Chr20 133735818 133738584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3043 2 105 Peroxidase AT4G33420 48.227 1.83e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3043 - - adu:107464553 405.986