Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3002 ATGGAAGGTGACAGGGAAATCATTGCTGCACCAAATGGGGTAGTTGATGGTGTTCAGAGAATTAGAGCATTGCACGGGAGGACGACTGGTCCTACAAGGCGTTCTACAAAAGGACAATGGACTGCCGAAGAGGATGAGARTTTGCGTAAAGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCTGAGTGTTTCAAGGATAGAACTGATGTCCAGTGCCTGCATAGATGGCAGAAAGTCCTAAATCCAGATCTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATCGAATTAGTGAATCAATATGGGCCTAAAAAGTGGTCTACTATTGCTCAGAGTTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCAATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTSATACGTGCTCATCAAATTTATGGAAACAAATGGGCAGAACTAACAAAGTTCTTACCTGGAAGGACAGACAATGCCATAAAAAACCACTGGAACAGTTCTGTAAAAAAGAAATTGGATTCTTACTTGGCGTCAGGCTTGATTACTCCGTTATCAAATGTACCGCTTGTTGGAAATCCCAATCAACCCATGGCCTCAACCTCTTCAAAGTTGCAGTCTAGTGGAGATGAAGCTGGTCATAGGGGGACTGAAGGAGAGGAAGTTTCACAATGTAGCCAGGAGTCAGCTAATGCCACACAGTTTCCATCTGCCAAAGAGATGAGCAATGTTTTACAATCCAGAGAGGAATACAGAGGAAACGAAGAATATGGTCCTGGAAAGGGGTATAGTCCTAGTCAAGCTTCTTGTTCAGAGCCATATTATGTTTCTCTGGACGACATCACTATATCTATCCCAGAGATGCCTCGCCAAGTGACTTCCTCCTCTCAATTCATTGAGCAAAATTACTCACAAGAACCTGTAAATCCAGCAGCCGGGGATTGCCATCATAATTTGCTTTCCTTACCCAATATTTCCTCACTGGGTTTTGTGCAGGAATCCACACAGTTGCAAAATGAGTGTATGGTTCATGCTCGCSGTGAAGGCCATGATATGGCCGATGCTCCATTTCAGACTTCTGTAGAGCTAGCTGTTTCYACATCCATAAGACCTACTGCTATGGACTCGCTACGAGAGCACATGTTGATATCTGATGATGAATGTTGCAGAGTTTTATTTTCAGAGGCAATAAGTGATGACGGCCCTTCTTCTGTGGACTATAATAAAGGTGTACATATGGTTGACTTGTCTGGGTGCACTTCCATTCTTCACGAGTCGTCTTTYCCATCTGCCTCAGTACCTACTGCTAATGATGGTAGATTGCAGTGTACTTCAGAAACAAAACATTTACTTCAGCCSGAGGATCAGCAGTTTGTCTCCAGAGCACATGATGTTTATGCTAATGACTTAGCCAGTGCTCCTTCTATTTATGGTATATGTAGTGCSGAAATGCAAGAGGAATCTGATATAGTGAATGACACTTCAAAATTGATCCCTGTAAATAGTTTTGGCTGTGGACCAGATACTAAAAAAACTGACCATTCTATCATGGAAAAGCRGAATGGGCATGCAGAACAGGAAGACACAGGAGCTTTATGTTATGAACCTCCCCGTTTTCCTAGTTCGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGCAGTGATATGCAGCAAGAATTTAGTCCCCTTGGTATTCGCCAGTTTATGATGTCCTCTATGAACTGTCTGACTCCCTTTAGGTTATGGGACTCACCTTGTCATGATAAAAGCCCGGATGCTTTGTTGAAAAGTGCTGCTAAAACCTTCACAGGTACACCATCAATATTAAAGAAACGACACCGTGATTTTTTGTCTCCTCTATCAGATAAGAGACTTGACAAGAAACTTGAGACATCCAACTTGATAAAAAACTTTTCCCGACTGGATGTCATGTTTGATGACAGTGAGACTCAGAAAGCAGATCCACTTTCTCCATCTACATTGAAGGAAAATCTTGGGCCATCTTCTGAAATGGAACAAGTAGACAAGAAAAATGAACCACCAATGCTGGACGACAATAAATCAGTAAATGATAAAGATGCTAGTGATTTTCTGGATAAGACTGAGCAACGAGCTCTCGATGTTGATTCTAAGAGGAACGATGATGTTAACACTACCGTTGAGATTGTGCAACAACATTCTGGAGTCTTGGTTGACCGTGATCCGAATAACTTGCTGTTGAATTCTCCTAAGCAAGTTGGTGTGAAATCAGACATAGTATTAAGTGCTAGAACAAATAAACATGCATGCTCAAGTGTTAAGTCTCCTTGTATTCGTGTGAAGGAGAATGAGAGAGTTTCAATTGCTCTTACATGTGTACAATCTGTTTGTTCAACAGCCGCCGTAGAAAACTTGGGTGATCAAACAGGAAAAGATGGAGGGTTTGAAACATCCAGCATATTTAATGAAACACCTTTTAGGAGAAGCCTTGAATCACCTTCACCGTGGAAATCTCCTTGGTTCATAAATACATTTRTGTCTAGRCCCAGGATTGATACCGAAATTACAATTGAGGATTTTGGGATATTCATGAGCCCATGTGATAGAAGCTATGATGCAATTGGGTTGATGAAACAGGTTAGCGAACAAACTGCTGCTCAATATGCCAATGCTCATGAYATTTTGGAAAATGAAACTCCTAAGGCGTTACCAAAAGATGCATCTYGAAACAACAGGGATGAGAACAAGGAAAATAATGATCCACAGAAGCAGCATGTGAACCATTCTCAATTGACTTCAAAAGCTTTGGTGGAGCGACGCATACTTGACTTCAGTGAATGCGGATCACCAGGCAAGGGTGACAGCAGCAAATCATCAAGCATGATCTTAGAAAGTCCGTCGTCATATTTGAAGGATTGTAGATAG 2961 0.4134 MEGDREIIAAPNGVVDGVQRIRALHGRTTGPTRRSTKGQWTAEEDEXLRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPDLVKGPWSKEEDEIIIELVNQYGPKKWSTIAQSLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLITPLSNVPLVGNPNQPMASTSSKLQSSGDEAGHRGTEGEEVSQCSQESANATQFPSAKEMSNVLQSREEYRGNEEYGPGKGYSPSQASCSEPYYVSLDDITISIPEMPRQVTSSSQFIEQNYSQEPVNPAAGDCHHNLLSLPNISSLGFVQESTQLQNECMVHARXEGHDMADAPFQTSVELAVSTSIRPTAMDSLREHMLISDDECCRVLFSEAISDDGPSSVDYNKGVHMVDLSGCTSILHESSFPSASVPTANDGRLQCTSETKHLLQPEDQQFVSRAHDVYANDLASAPSIYGICSAEMQEESDIVNDTSKLIPVNSFGCGPDTKKTDHSIMEKXNGHAEQEDTGALCYEPPRFPSSDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPCHDKSPDALLKSAAKTFTGTPSILKKRHRDFLSPLSDKRLDKKLETSNLIKNFSRLDVMFDDSETQKADPLSPSTLKENLGPSSEMEQVDKKNEPPMLDDNKSVNDKDASDFLDKTEQRALDVDSKRNDDVNTTVEIVQQHSGVLVDRDPNNLLLNSPKQVGVKSDIVLSARTNKHACSSVKSPCIRVKENERVSIALTCVQSVCSTAAVENLGDQTGKDGGFETSSIFNETPFRRSLESPSPWKSPWFINTFXSRPRIDTEITIEDFGIFMSPCDRSYDAIGLMKQVSEQTAAQYANAHDILENETPKALPKDASXNNRDENKENNDPQKQHVNHSQLTSKALVERRILDFSECGSPGKGDSSKSSSMILESPSSYLKDCR* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3002 986 MobiDBLite consensus disorder prediction 963 978 - -
Amo20g3002 986 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Amo20g3002 986 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Amo20g3002 986 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Amo20g3002 986 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Amo20g3002 986 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Amo20g3002 986 SMART sant 88 137 IPR001005 -
Amo20g3002 986 SMART sant 140 188 IPR001005 -
Amo20g3002 986 SMART sant 36 85 IPR001005 -
Amo20g3002 986 Gene3D - 142 199 - -
Amo20g3002 986 CDD SANT 143 183 IPR001005 -
Amo20g3002 986 MobiDBLite consensus disorder prediction 237 261 - -
Amo20g3002 986 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Amo20g3002 986 Pfam Myb-like DNA-binding domain 92 150 - -
Amo20g3002 986 PANTHER MYB PROTEIN-RELATED 7 985 - -
Amo20g3002 986 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Amo20g3002 986 MobiDBLite consensus disorder prediction 204 286 - -
Amo20g3002 986 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Amo20g3002 986 MobiDBLite consensus disorder prediction 204 227 - -
Amo20g3002 986 MobiDBLite consensus disorder prediction 688 717 - -
Amo20g3002 986 Gene3D - 36 88 - -
Amo20g3002 986 Gene3D - 89 140 - -
Amo20g3002 986 CDD SANT 40 83 IPR001005 -
Amo20g3002 986 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Amo20g3002 986 PANTHER TRANSCRIPTION REPRESSOR MYB5 7 985 - -
Amo20g3002 986 MobiDBLite consensus disorder prediction 903 986 - -
Amo20g3002 986 MobiDBLite consensus disorder prediction 919 935 - -
Amo20g3002 986 MobiDBLite consensus disorder prediction 671 686 - -
Amo20g3002 986 MobiDBLite consensus disorder prediction 668 717 - -
Amo20g3002 986 CDD SANT 91 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3002 Amo-Chr20 132480398 132486320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3002 8 986 MYB Transcription Factor Family AT4G32730 43.883 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo20g3002 Myb_DNA-bind_6 5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3002 20 132480398 132486320 Amo20g3002 20 132480398 132486320 ECH
Amo06g3118 06 98278821 98283778 Amo20g3002 20 132480398 132486320 PCT
Amo20g3002 20 132480398 132486320 Amo06g3118 06 98278821 98283778 PCT