Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2992 ATGGCTTCAGTCTCTAACGCTGGTGCGGAAGCAACAACTTTCTTCACAGAGCGAAACGGCTTTGGATCTAGCTCCGAAATTGGTGAGGCAGTTGGATTTCACAGCACACCTGAAACTGGCGCCGACTCCGCCGCCGCAGTCGCTGGCAGAGGCGATTCCGCGAACGCCATCACGATCACCGTTGCAATTGCAATTGACTCTGCATCCGCTAGGGCAACAGCAACAACAGCAGCAACAACCGCAGCCGTGGTTGTTTTCGCAGGGACAGCAGCTGAGAGTGCCGCCGCAGTCGCCAGCGGTGCGGCAGCAAAAGCTTTCGCCGGTTCCTCGAATTCCGTACACTGTSCAGAAGCTTCCGGTAAAGGCGTTCAAAGTGTCGAGTCTCCCAGTCCCAGATCACAACCTTGGTATAATGTTGAATTAAAAGACAGCACTCCAAAGAAATCAAAACAATGTAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGTGAATGCTTTGCATCTGGGATGTATTGTGATGGTTGCAATTGTACAAATTGTCAAAACAATGTGGATAATGAGGCAGCTAGACAGGAGGCTGTTGGACTTACATTAGAGCGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCACAAGAAACTCGAGATTCCAAGGAAGATGTGTCTGAAATTCAATTAGTTGGAAAGCACAATAAAGGATGTCACTGTAAAAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGCAAATGCATGGACTGCAAGAATTTTGAAGGAAGTAATGAAAGAAGAGCAAGTTTTCATGAAGAGTGTAATATGTTTCGCATCAAACAGGAAGCAAATGCTGCCATCAGTGGAGCAGTTGGTTTCTCTGGCTACGGGACTGGAATTGCCATAACACCCAAGAAAAGAAAAATTCAGGAAATATTTTCTAGCAAATCGTCAATAGATAAAACTGTTTGCCAAACAACTCAATATCAACAGGAAACTGATCCTATAGTTACACCACCGACATCTCAGTCAACTTTCTTTTATGTTGACACTGCCAACACTAGAAATTCAGGTTATTCAAGATCTACATACAGGTCACCATTGGCGGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCAGGAGTAGCTGCCAAGACAAATGCAGAAATGAGAGCCAAAGTAGGCCAGAACGTTGATGCTGGGAAATTTAAATCTTCTATTCCTTCATCAACTCAGTTGCTGCAAGACAGGGAAGATGTCTGCAAGTTTGTATGTGATAATTGTAAAGATGAAGTAGATAGAGTTGATATTGACTGTTATAATAGGCCACTTTCACCAGAAACCCTATCACTGATGTGTGATGAACAAGATGAGGTGTTTTTCYATAATGGTTCTGCAAATAGAGTGGCATGCAACAATTTTCAAAGRATTGTTCAAAAMTCATCTACTTCTGATCGATGCCCTGATGTGTATGAGGAGCAAGAAAGGGTTGTACTCACAAAGTTCTGGGATGTTCTACGRGGACTCATTACTGTTGGAAGCATAAAAGAAACAATGTGCTCTTCATTAGCCAAGAAAGARGGGGGAAGCGAGGAAGAACRTGCAGCCAACAGTAATGGTGCTGAAGTTGATATAGGGAGTGAAAAGAAGGAAACTCCCAGCAACTGTGTTGCAAGGTGCCCCATCTCATCATCGGCCATTGAAATATCTCAGAAAAAGCATGCAATGATCGATGGCAATGGTGATCTTGATCTCTCGTTAAGGTTTGCTTGCCAATTTTATGGAAGGGAATGA 1848 0.4318 MASVSNAGAEATTFFTERNGFGSSSEIGEAVGFHSTPETGADSAAAVAGRGDSANAITITVAIAIDSASARATATTAATTAAVVVFAGTAAESAAAVASGAAAKAFAGSSNSVHCXEASGKGVQSVESPSPRSQPWYNVELKDSTPKKSKQCNCKNSRCLKLYCECFASGMYCDGCNCTNCQNNVDNEAARQEAVGLTLERNPNAFRPKIASSPQETRDSKEDVSEIQLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSNERRASFHEECNMFRIKQEANAAISGAVGFSGYGTGIAITPKKRKIQEIFSSKSSIDKTVCQTTQYQQETDPIVTPPTSQSTFFYVDTANTRNSGYSRSTYRSPLADVLQPQNVKNLCSLFVVLSGVAAKTNAEMRAKVGQNVDAGKFKSSIPSSTQLLQDREDVCKFVCDNCKDEVDRVDIDCYNRPLSPETLSLMCDEQDEVFFXNGSANRVACNNFQRIVQXSSTSDRCPDVYEEQERVVLTKFWDVLRGLITVGSIKETMCSSLAKKEGGSEEEXAANSNGAEVDIGSEKKETPSNCVARCPISSSAIEISQKKHAMIDGNGDLDLSLRFACQFYGRE* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2992 615 ProSiteProfiles CRC domain profile. 148 272 IPR005172 -
Amo20g2992 615 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 235 269 IPR005172 -
Amo20g2992 615 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 150 184 IPR005172 -
Amo20g2992 615 SMART CXC_2 232 273 IPR033467 -
Amo20g2992 615 SMART CXC_2 147 187 IPR033467 -
Amo20g2992 615 PANTHER TESMIN/TSO1-RELATED 121 583 IPR028307 -
Amo20g2992 615 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 121 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2992 Amo-Chr20 132222917 132227693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2992 127 543 CPP Transcription Factor Family AT4G29000 50.917 7.16e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo20g2992 TCR 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2992 - K21776 gmx:100811459 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2992 20 132222917 132227693 Amo20g2992 20 132222917 132227693 ECH
Amo10g2430 10 85459917 85464249 Amo20g2992 20 132222917 132227693 hybridization