Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2986 ATGGACCTGGTAAAAACCGGTTTGACCCGACCGGTTTTTATTAAAACCGGTGATCCGGCCGAATGGAATTGGAACCCACCTAACCCCCAGCCAGCCTTGTGTCTCTTCTCTCTCGAGCTCGACAGTCCATCACTCACGGCGGCTCACGACGGCTCACGGCGTCACCTTCACTTCGTCACTCACTCGTCGCTCCCCTCACCTCGTCGGTCGTCACTCTTAATCTCTCACGGCCTTACCTCGTCGCGCTCTCGGTCTCTCACCTCGTCCCCTCACCTGGTCGTCGTCTTCTTGCTTCTCAAGGTCTCTGTCTCGCACCTGGCCTCGATRTCTCCCTTCCCTGCGCTCTTCGTCGCCGGTAGCAGAGGCAACATATTCCGGTGGGCTTATCTTCGTTGTCGTCTTCTTGCTTCGAACCTTYCCGTCAGCTTCTCCCTCGCCATCAGCTTCTCCTTCGCCGTCAACTTCCTTCTTGCAACCCGATTTGTTTTGCTTCATCTCTCTGCCCAGGTAACCTCGTGTAAGCTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGTACCACAGTTTCATGGACTTTCCGTGGGTTTTATGAGAAGGTGGCACTTCTTGATTATGAAAGACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAGCCTATGAATATCGAAAATCGGACTTCAGCATCAGGTAGAGCACGTAGAGATGCTGCAGCACGCGCTATGCGGGGTTGGCACTCACAACGTCTTCTAGGCAATGGTGAAGTTGGTGACCCCATTATTAAGGTCTGGTACAATTCTAAGGATTGCTTTGAGGTATATGCTTTAGTTCCTAGTCTACTTCGAGAAGAGGTATATGCTTTAGTTCCTGGTGAAAATGTAACAGATTTCAGTCTGACATCTGCTGCATTGGATACTAATTCGAAAGGGAAGGACAAGATTAGGTCTGATCAGGATGAAGATGAAATTATAACCCCTTCTGATGCTGTTGTGGGTGAAACATGTGAAGGGGAGTCTAAAATGGCAGTTAACGATGCAATGAATGTTGGCTCGTCAACTGTATCAGATCCCCACAAAGCTGAAGTGATGCCAGATGTATTGCCTGAAATTAAGATATATGCTGATGAAAATGTGAGAGATTGCGTTTTTACATCTGAACTGGGGACTAGTTTGAAGGGAAAGGATGAGATCAAAACAGATGTTGAAGAAGTTGAAATTATAGTCCCTTCGGATACTGGTGTTGGTGAAAATGAAGATGACTCTGCAAGATCAGTTAGAGATGCAGTTAACTTGGATCCTCAAGTGGCTGGTGGAGTTGTTAATCTGAAGGAAAAAGACAGTGCCGAGTTCCCTTCTGTGCTTGGCCAAGATGATTCCCCACTTGGTTCAAATTCTGTTGTAATAACAAATGCTTCAATACGTGATGTACAGTTAGAGTCTGCTCATGTTCAGTTTTCTAATTCTAGTGATGCTCAGACTTTACTTGAAAAGGAAGAAGAAAATACTAATTCTAATATCCTTCCTACAAGTGTTGATAGAACTGAAGAATCGCCTTCAGCTCAAGCTCTGATAAACGACGCTGCAAAAGAATGGAACTCACCGGCAAGATATCCTACGGAAATGAAGAGGGAAAAATGGAAAGCCAAGAGCAGACCATATTGGATACAATTA 1695 0.459 MDLVKTGLTRPVFIKTGDPAEWNWNPPNPQPALCLFSLELDSPSLTAAHDGSRRHLHFVTHSSLPSPRRSSLLISHGLTSSRSRSLTSSPHLVVVFLLLKVSVSHLASXSPFPALFVAGSRGNIFRWAYLRCRLLASNLXVSFSLAISFSFAVNFLLATRFVLLHLSAQVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKVALLDYERHKIKGGELSVPIPSQPEPMNIENRTSASGRARRDAAARAMRGWHSQRLLGNGEVGDPIIKVWYNSKDCFEVYALVPSLLREEVYALVPGENVTDFSLTSAALDTNSKGKDKIRSDQDEDEIITPSDAVVGETCEGESKMAVNDAMNVGSSTVSDPHKAEVMPDVLPEIKIYADENVRDCVFTSELGTSLKGKDEIKTDVEEVEIIVPSDTGVGENEDDSARSVRDAVNLDPQVAGGVVNLKEKDSAEFPSVLGQDDSPLGSNSVVITNASIRDVQLESAHVQFSNSSDAQTLLEKEEENTNSNILPTSVDRTEESPSAQALINDAAKEWNSPARYPTEMKREKWKAKSRPYWIQL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2986 565 MobiDBLite consensus disorder prediction 507 526 - -
Amo20g2986 565 Gene3D - 165 219 IPR036431 GO:0003677
Amo20g2986 565 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 169 270 IPR045147 GO:0006357
Amo20g2986 565 SUPERFAMILY ARID-like 168 220 IPR036431 GO:0003677
Amo20g2986 565 CDD ARID 168 209 - -
Amo20g2986 565 PANTHER BNAC07G06470D PROTEIN 169 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2986 Amo-Chr20 132191518 132196279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2986 170 270 ARID Transcription Factor Family AT1G76510 65.094 3.63e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2986 - - aip:107622719 429.098