Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2980 ATGCTTCTAGACAAGAATGTCATTCATGAAACGCATTATGAGGTTCTCAACGTCAAGGAAGATTCAAGTTATGAAGAAATCCGTGCTAGTTACTGCTCCGCCATACTCAGTTTACATCCTGATAAGCTATTGAAATCTTCTGATGCATCCGGCAGCAATCAAACTAGTGGAGATAGATTTCTCAAAGCTGTTGATGTTGCAGAAGATTTAAGCTTAGAGGATATGATGGCTGAAGATGACGGAGAAGCATTGGAACTGTTTTATCAGTGCAGATGTGGAGATTACTTCTCTATAGACTCATTGGAATTGCATAAAATAGGGTATTCCTTATTGAGGGATGAAAGTAGAATATCTATATTGAACAATGATTCTTTGCTAGGATTACTTATTCTTCCTTGCGGATCATGTTCTCTAAAAGCTCATCTGGTAATCAATATGGATGGACATTGA 450 0.3756 MLLDKNVIHETHYEVLNVKEDSSYEEIRASYCSAILSLHPDKLLKSSDASGSNQTSGDRFLKAVDVAEDLSLEDMMAEDDGEALELFYQCRCGDYFSIDSLELHKIGYSLLRDESRISILNNDSLLGLLILPCGSCSLKAHLVINMDGH* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2980 149 Pfam DnaJ domain 11 49 IPR001623 -
Amo20g2980 149 Gene3D DnaJ domain 10 68 IPR036869 -
Amo20g2980 149 Gene3D DPH Zinc finger 69 149 IPR036671 -
Amo20g2980 149 PANTHER DPH3 HOMOLOG-RELATED 64 147 IPR044248 GO:0017183|GO:0046872
Amo20g2980 149 CDD DnaJ 11 49 IPR001623 -
Amo20g2980 149 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 66 145 IPR007872 -
Amo20g2980 149 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Amo20g2980 149 SUPERFAMILY Chaperone J-domain 10 45 IPR036869 -
Amo20g2980 149 SUPERFAMILY CSL zinc finger 67 147 IPR036671 -
Amo20g2980 149 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 60 - -
Amo20g2980 149 Pfam CSL zinc finger 69 143 IPR007872 -
Amo20g2980 149 PANTHER DPH3 HOMOLOG-RELATED 1 60 IPR044248 GO:0017183|GO:0046872
Amo20g2980 149 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 64 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2980 Amo-Chr20 132155820 132156356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2980 12 71 C2H2 Transcription Factor Family AT1G74250 43.333 1.43e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2980 K17867 - gmx:100814856 205.297