Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2937 ATGCAGACATCCATTAATAAAGGGATTATCATGGTCAAGCGCGGCAAAATCTTTTACCGAGTTTCAAAATTTACGGAGCCCTATATAAGGTTGCCACAATCAGTTTATAAACTATTTCTTTCAAACACACATTTTAAAAGCTTATACATAACCTCATATGAGTTAGTTGTGTTAGAACATTTGGTTAATCCAAAGATGACAGAGGTGTTTGACAAGTTGATGGATGTCAATGCACGAAAACTTGATTGGAACTTTCAAGTTTATGCTTTCCACCTCTGGGAAGTTCCTAATAGATTTAATATAAATGATATCAATGGAATAGAGATGGTTCTCCAAGACATTCAGCCTGTTGCTAAACCAAGTTATCCTCTGAAAGCATTTTGCTTTAAACCCATTCCGGAGTTGCTGGCTGCCGAAAAGCTGGAAGATTCAGTGCTTATAGTGCAAAGTCATTTTGATATATCCAAGTTACGTATTAACCCTGAACTTGATGAGGTCAAAGAGTTTCGTAACAGGAGGCTTTCTAGCAAACCATCTAATTCGGCAAGGATTAGTCAAGTTTCATCCCATGGTCCACGTTCCGGTGCAGACGAAATAAGAAATGGGGATGCCGTAGTCAAAACAATTGAAGAAGTTTTAAGCTCTACACAGGAAGGACTTACATGGATTGCCGGTACTATTGTTTTGATCAATGCTGGAAAGGATGATTGGTTTTATAAATCCTGCCGAAAGTGTCCAAAGAAGGTAGACACCCCAATCGGCAACAGATATGAGTGTGAAAAATGTGGCCACACTCATGGTAGCGCATCACTTAGGTTCAAGCTCGAGGTAATGGTATATGATGGAACAGGAAGCTTGATGTTGCTGATGTGGGACAGGAAAACGGTACAGCTTTGTGGGAGGCAAGCTGAGCAAATCAAGAATGAAGAAGCCGTTGATGGAGAAGGTTATCCTCCAGCATTGGATAGCATGATGGATAGGAGGTTACTCTTCAAATTAAATGTCAAAGTGTCGAACATTAAGCAGTATGGCCATGTTTATACAGTCATGAAAATATGTGATGATGAGGAAATTGTGGAGATTAACCACCCTAAAGCAGTTCCAAACATTGCTGCTGCTACTCTCACTGATACTGGATGCAGTGACTCACTTGATATATCGGCAGCGGTGGTTAATCTGCATAATGATACTGATTCTACACTTTCTGTGGATGGCTTAGAAGATAGTGTCACAAGCCTCAAGTCCAAAACCCCTGCTAAAAGAGCTTCCGTGGGGCTAAAGCAATCCGTGCATATCAATATTGACAATGAAGATGAGTTGGGGTTCTCTACCAACAAGTTTAGCCGAAAGGGTGGAAAGAGGCAGAAGATGCAAATTAATGACAGTGACAACTGA 1395 0.4057 MQTSINKGIIMVKRGKIFYRVSKFTEPYIRLPQSVYKLFLSNTHFKSLYITSYELVVLEHLVNPKMTEVFDKLMDVNARKLDWNFQVYAFHLWEVPNRFNINDINGIEMVLQDIQPVAKPSYPLKAFCFKPIPELLAAEKLEDSVLIVQSHFDISKLRINPELDEVKEFRNRRLSSKPSNSARISQVSSHGPRSGADEIRNGDAVVKTIEEVLSSTQEGLTWIAGTIVLINAGKDDWFYKSCRKCPKKVDTPIGNRYECEKCGHTHGSASLRFKLEVMVYDGTGSLMLLMWDRKTVQLCGRQAEQIKNEEAVDGEGYPPALDSMMDRRLLFKLNVKVSNIKQYGHVYTVMKICDDEEIVEINHPKAVPNIAAATLTDTGCSDSLDISAAVVNLHNDTDSTLSVDGLEDSVTSLKSKTPAKRASVGLKQSVHINIDNEDELGFSTNKFSRKGGKRQKMQINDSDN* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2937 464 MobiDBLite consensus disorder prediction 445 464 - -
Amo20g2937 464 CDD RPA1_DBD_C 206 364 IPR013955 -
Amo20g2937 464 Gene3D - 190 361 IPR012340 -
Amo20g2937 464 MobiDBLite consensus disorder prediction 175 192 - -
Amo20g2937 464 PANTHER REPLICATION FACTOR A 1, RFA1 154 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo20g2937 464 MobiDBLite consensus disorder prediction 174 198 - -
Amo20g2937 464 SUPERFAMILY Nucleic acid-binding proteins 207 357 IPR012340 -
Amo20g2937 464 Pfam Replication factor-A C terminal domain 225 352 IPR013955 -
Amo20g2937 464 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE 154 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2937 Amo-Chr20 131520528 131523289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2937 238 315 Core DNA Replication Machinery Family AT5G08020 29.487 1.09e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2937 - - aip:107630584 447.973