Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo20g2922 | ATGTGCATTTCCTCTTACAACCCTAACCCTTCTAGAAGACTAGCTCTCTTTCACCTTCTTTCTGGTCCTTTTGCTATTCCACAGTCCCAATCTCTGTTATTTGGTGTAAAAGGTTCAGAATTGTTTAGAGTAGGAGAGGCTAATGCAGCAGAGAATCTAATTCAACCAGAGCAAAACTTGTTTGAATGGGTCAAAAATGACAATAGAAGATTCTTACATGTTGTGTACCGTGTTGGGGACTTGGATAAGACTATAAAGTTTTACACGGAGTGCCTTGGCATGAACCTGTTGAGAAAACGTGATATACCTGAAGAAAGATACACAAATGCTTTTCTTGGATATGGCCCTGAAGATTCCAATTTTACAGTTGAGCTTACCTACAATTATGGAGTGGACAAGTATGACATTGGAAATGGGTTTGGTCATTTGGGTGTTGTAGTTGAAGATGCTGCCAAGGCAGTTGATCTGATAAAAGCAAAAGGTGGAAAGGTTATCAAGGAACCAGGGCCTGTCAAAGGTGGCAGCACAGTAACTTCTTTCATCCAAGATCCTGATGGTTATGAATTTGAGCTCTTGGAAAGAGGACTTACTTCCGAACCCCTATGCCAAGTGTCACTTCGTGTAGGTGATCTTGACCGTGCCATAGTCTTCTATCAGAAAGCTCTTGGCATGCAACTTCTGCATAGGAAAGACAATCCTGAGCACAAGAATACAGTTGCCACAATGGGGTATGGTCCTGAAGATAAGAACACTGTTCTAGAACTTACATATAACTATGGAATCACTAATTATGACAAAGGAAATGGCTATGGACAGATTGCAATAGGCACAAATGATGTGTATAAGAGTGCAGAAGCAATCAAACTGTGTGGAGGCAAGATTATCCGTGAACCTGGGCCGCTGCCAGGTATCAACACCAAGATAGCAGTTTGCTTGGACCCTGATGGTTGGAAATTGGTATGCATAACCTTTCCCTCTATTTGA | 984 | 0.4167 | MCISSYNPNPSRRLALFHLLSGPFAIPQSQSLLFGVKGSELFRVGEANAAENLIQPEQNLFEWVKNDNRRFLHVVYRVGDLDKTIKFYTECLGMNLLRKRDIPEERYTNAFLGYGPEDSNFTVELTYNYGVDKYDIGNGFGHLGVVVEDAAKAVDLIKAKGGKVIKEPGPVKGGSTVTSFIQDPDGYEFELLERGLTSEPLCQVSLRVGDLDRAIVFYQKALGMQLLHRKDNPEHKNTVATMGYGPEDKNTVLELTYNYGITNYDKGNGYGQIAIGTNDVYKSAEAIKLCGGKIIREPGPLPGINTKIAVCLDPDGWKLVCITFPSI* | 328 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo20g2922 | 327 | TIGRFAM | glyox_I: lactoylglutathione lyase | 201 | 320 | IPR004361 | GO:0004462|GO:0046872 | |
| Amo20g2922 | 327 | TIGRFAM | glyox_I: lactoylglutathione lyase | 59 | 203 | IPR004361 | GO:0004462|GO:0046872 | |
| Amo20g2922 | 327 | ProSitePatterns | Glyoxalase I signature 1. | 73 | 94 | IPR018146 | GO:0004462|GO:0046872 | |
| Amo20g2922 | 327 | PANTHER | LACTOYLGLUTATHIONE LYASE | 3 | 322 | - | - | |
| Amo20g2922 | 327 | Gene3D | - | 44 | 195 | IPR029068 | - | |
| Amo20g2922 | 327 | CDD | GlxI_Ni | 72 | 192 | - | - | |
| Amo20g2922 | 327 | Gene3D | - | 197 | 324 | IPR029068 | - | |
| Amo20g2922 | 327 | PANTHER | LACTOYLGLUTATHIONE LYASE | 3 | 322 | - | - | |
| Amo20g2922 | 327 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 69 | 194 | IPR029068 | - | |
| Amo20g2922 | 327 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 70 | 194 | IPR037523 | - | |
| Amo20g2922 | 327 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 200 | 324 | IPR037523 | - | |
| Amo20g2922 | 327 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 201 | 324 | IPR029068 | - | |
| Amo20g2922 | 327 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 203 | 319 | IPR004360 | - | |
| Amo20g2922 | 327 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 71 | 191 | IPR004360 | - | |
| Amo20g2922 | 327 | ProSitePatterns | Glyoxalase I signature 1. | 203 | 224 | IPR018146 | GO:0004462|GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo20g2922 | Amo-Chr20 | 130873932 | 130875985 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo20g2922 | 201 | 327 | Calmodulin-binding Proteins | AT1G08110 | 26.974 | 2.39e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo20g2922 | K01759 | - | gmx:100810908 | 523.857 |