Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2920 ATGGAGAGGGTTGTGGGAGGAAAGTACAAGATCGGTAAGAAAATTGGAAGCGGTTCCTTCGGTGAAATTTATATTGCTACAAATATTGAGACCTCTGAGATTGTGGCCGTCAAGATGGAGAACAAGAAAACCAAACATCCACAGCTGCTCTATGAGGCAAAGTTGTATAATCTTCTTCAAGGAGAAAGCGGTGTACCAAGTATGAAATGGTGTGGCATTGATGGAGAAAATAATGTTCTAGTTATTGATCTTCTGGGACCGAGTCTCGAGGACCTTTTTGTCTATTGCGGGAGAAAATTTACATTGAAAACGGTTTTGATGTTGGCTGATCAGATGCTTACGAGAATCGAGTACCTACATTCGAAGGGATATTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAAGCAACCCAGGTTTATATTATTGACTTTGGACTTGCAAAAAGATATAAGGACCTTAGCACAAATAAACATATTCCTTACAGAGAGAATAAAAACTTAACAGGAACTGCACGCTATGCAAGTTGTAATACTCACATAGGAATTGAGCAAAGTCGTCGAGATGATTTAGAGTCTCTTGGCTATGTTCTTATGTACTTCTTAAGAGGAAGCCTTCCCTGGCAGGGTCTGAAAGCTGTAACCAAAAAGGAAAAATATGATAGGATTTGTGAGAAGAAGTTGTCAACTCCCATTGAGATGCTTTGCAAGTCATATCCCGTGGAGTTCGCTTCTTACTTTCATTATTGCCACTCCTTGACATTTGATCAACTACCAGATTATGGATTCTTGAAGCGCTTGTTTCGTGATTTGTTCTCTCGTGAAGGATTTGAATCTGACAATTTGTTTGACTGGACCATTCTAAAGTACCAACAGACACAACAGAGACAGAGACAGATACAAAATCAAACAGCTCCTTCGGCCGCTGTACCTAGCAGTCTAGAACCCATGGCTACGGACAAGAATACAGGTTCAGGAGTCAATGATTCAGCTCATGTAACTGCAACAAGACAGTTGGCGAACCAGAATCATGATCGTCCAAGCGCAACTGCACAGCCTAAACCATCTGTTGGTCACAATCATAGTTTCAAGAATCAGACTGAGAAACATAACGTGAACAACGGTCCATCTACATCATCTGGCTTGCCAAAATCCTCTAAAGAAAATGCATCAAAAGCAGAAAAGCCCTTAGGAAGTTCACACATTGCTCGCGTTTTCGGTAGTAATTCTCGTACTTCAAGCAGTTGGATTCCTTCGCTACGCCGAATTTCTTCAGCCAAATAA 1299 0.4111 MERVVGGKYKIGKKIGSGSFGEIYIATNIETSEIVAVKMENKKTKHPQLLYEAKLYNLLQGESGVPSMKWCGIDGENNVLVIDLLGPSLEDLFVYCGRKFTLKTVLMLADQMLTRIEYLHSKGYLHRDIKPDNFLMGLGRKATQVYIIDFGLAKRYKDLSTNKHIPYRENKNLTGTARYASCNTHIGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDRICEKKLSTPIEMLCKSYPVEFASYFHYCHSLTFDQLPDYGFLKRLFRDLFSREGFESDNLFDWTILKYQQTQQRQRQIQNQTAPSAAVPSSLEPMATDKNTGSGVNDSAHVTATRQLANQNHDRPSATAQPKPSVGHNHSFKNQTEKHNVNNGPSTSSGLPKSSKENASKAEKPLGSSHIARVFGSNSRTSSSWIPSLRRISSAK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2920 432 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 416 - -
Amo20g2920 432 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Amo20g2920 432 PANTHER CASEIN KINASE-RELATED 1 416 - -
Amo20g2920 432 Gene3D Transferase(Phosphotransferase) domain 1 1 343 - -
Amo20g2920 432 MobiDBLite consensus disorder prediction 302 432 - -
Amo20g2920 432 MobiDBLite consensus disorder prediction 302 392 - -
Amo20g2920 432 MobiDBLite consensus disorder prediction 408 432 - -
Amo20g2920 432 Pfam Protein kinase domain 9 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2920 432 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Amo20g2920 432 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2920 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Amo20g2920 432 ProSiteProfiles Protein kinase domain profile. 9 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2920 Amo-Chr20 130860576 130865934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2920 8 213 MAP Kinase Kinase Kinase AT3G06030 26.606 5.00e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Amo20g2920 Pkinase 1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2920 K08960 - gmx:100792736 672.544